Identifying aspirin polymorphs from combined DFT-based crystal structure prediction and solid-state NMR

A combined experimental and computational approach was used to distinguish between different polymorphs of the pharmaceutical drug aspirin. This method involves the use of ab initio random structure searching (AIRSS), a density functional theory (DFT)-based crystal structure prediction method for the high-accuracy prediction of polymorphic structures, with DFT calculations of nuclear magnetic resonance (NMR) parameters and solid-state NMR experiments at natural abundance. AIRSS was used to predict the crystal structures of form-I and form-II of aspirin. The root-mean-square deviation between experimental and calculated ¹H chemical shifts was used to identify form-I as the polymorph present in the experimental sample, the selection being successful despite the large similarities between the molecular environments in the crystals of the two polymorphs.     

A note on Koornwinder's polynomials with weight function (1−x)α(1+x)β+Mδ(x+1)+Nδ(x−1)

We derive the distribution and three-term recurrence relation for the Koornwinder [2] polynomials with weight function shown above using the method developed in our paper [3]. We are able to obtain explicit expressions for the linear functional in terms of the coefficients of the three-term recurrence relation for the Jacobi polynomials and we obtain the distribution using a more direct approach.     

Fluoroquinolone Antimicrobials: Singlet Oxygen, Superoxide and Phototoxicity

The fluoroquinolone antibacterial agents possess photo-sensitizing properties that lead to phototoxic responses in both human and animal subjects. The phototoxicity order reported in humans is: fleroxacin > lomefloxacin, pefloxacin > ciprofloxacin ? enoxacin, norfloxacin and ofloxacin. Studies both in vivo and in vitro have related this phototoxicity to the generation of reactive oxygen species including hydrogen peroxide and the hydroxyl radical. We determined the quantum yields of singlet oxygen generation (φ_Δ,) by detection of the singlet oxygen (¹O₂) luminescence at 1270 tun for several fluoroquinolones, naphthyridines and other structurally related compounds. All the fluoroquinolones examined have low φ_Δ values ranging from 0.06 to 0.09 in phosphate buffer at pD 7.5. We also determined the ¹O₂ quenching constants for these compounds and their values were on the order of 10⁶M^?1 s¹, except for lomefloxacin whose rate constant was 1.8 × 10⁷M^?1 s^?1. The φ_Δ values were significantly decreased in a solvent of lower polarity such as methanol (0.007 ≤φ_Δ≤ 0.02). The production of ¹O₂ by these antibiotics did not correlate with the order reported for their phototoxicity. We also measured the photogeneration (λ > 300 nm) of superoxide by these antibacterials in dimethylsulfoxide using electron paramagnetic resonance and the spin trap 5,5-dimethyl-l-pyrroiine N-oxide. Although there is not a one-to-one correspondence between the relative rates of superoxide generation and the phototoxicity ranking of the fluoroquinolones, the more phototoxic compounds tended to produce superoxide at a faster rate. Nevertheless, the magnitudes of the observed differences do not appear sufficient to explain the range of fluoroquinolone phototoxicity potencies in human and animal subjects in general and the high activity of fleroxacin and lomefloxacin in particular. For these latter drugs the photoinduced loss of the F₈ atom as fluoride and the concomitant generation of a highly reactive carbene at C-8 provide a more plausible mechanism for their potent phototoxic and photocarcinogenic properties.     

PHOTOINACTIVATION OF CATALASE

Abstract— Inactivation of catalase with visible light (>400nm) has been studied in purified bovine liver catalase and in peroxisomal catalase in the mitochondrial fraction of rat liver. Light corresponding to that of maximal absorbance of the heme site (405 nm) was most effective in inactivation. Although photoinactivation is O₂ dependent, scavengers of OH radical, ¹O₂ and O⁻₂ did not protect against loss of activity in either system. Superoxide dismutase partially protected purified catalase added into the mitochondrial fraction system. However, complete protection of catalase was afforded by low concentrations of substrates such as formic acid or methanol which rapidly convert Compound I to Ferricatalase.     

Versuche mit markierten Atomen über den Mechanismus der Vermehrung von Tabakmosaikvirus in Nicotiana tabacum

Zusammenfassung Tabakmosaikvirus hoher spezifischer Aktivität, das am Phosphor und/oder Kohlenstoff markiert war, wurde biosynthetisch hergestellt. Damit wurde jeweils ein Blatt einer Pflanze von Nicotiana tabacum infiziert und der etwaige Transport von intaktem Virus durch das Leitungssystem der Pflanzen dadurch weitgehend unterbunden, daß die Leitgefäße des behandelten Blattes durchtrennt wurden.Das aus den unbehandelten Blättern der Pflanze nach 17 1/2, 48 und 72 Stdn. isolierte Virus wies im Vergleich zum eingesetzten TMV einen viel geringeren Anteil an Gesamtradiokohlenstoff im Protein auf. Dies deutet darauf hin, daß das Virus der unbehandelten Blätter höchstens zu einem sehr geringen Teil aus intakt transportiertem TMV bestehen könnte.Die nicht im TMV enthaltenen Polynukleotide der unbehandelten Blätter enthalten 7 Stdn. nach der Infektion verhältnismäßig viel³²P, doch tritt derselbe innerhalb 70 Stdn. zum allergrößten Teil in niedermolekulare Verbindungen über.Die in Puffer unlöslichen Polynukleotide der unbehandelten Blätter (Blattnukleinsäure) weisen ein mit der Zeit abnehmendes Verhältnis von³²P/¹⁴C auf. Auch innerhalb der Nukleinsäure (NS) des TMV dieser Blätter nimmt dieses Verhältnis zunächst ab, steigt aber später wieder an.Die angeführten Ergebnisse stehen mit der Vorstellung im Einklang, daß das Virus NS abspaltet und sowohl die systemische Infektion der Pflanze wie auch die Virusvermehrung mindestens zum Teil durch diese freie NS bewirkt wird. Die aus dem Virus stammende freie NS unterliegt zum großen Teil lebhaftem Abbau, wobei ihre Komponenten wahrscheinlich dem Aufbau normaler Blattbestandteile dienen.Mit 3 Abbildungen     

Mass spectrometry compatibility of two-dimensional gel protein stains

As proteomic technology evolves, protein staining sensitivity is constantly being improved, enabling researchers to better visualize the proteome of their system. The current challenge is to balance the limits of detection of protein visualization with those of the mass spectrometric methods. In this report, mass spectra generated from human serum or rat liver proteins stained with either colloidal Coomassie blue, Daiichi silver, SYPRO Orange, SYPRO Red, SYPRO Ruby, or SYPRO Tangerine are compared. It has been concluded that the newest generation of fluorescent protein stains, compared with traditional staining methods, are more compatible to matrix-assisted laser desorption/ionization (MALDI) and liquid chromatography-tandem mass spectrometry (LC-MS/MS) methods. The number of database matches obtained using each mass spectrometry method and the percent sequence coverage obtained from trypsin digested proteins stained using these six methods is provided.     

Vinylation and polymerization with trivinylaluminum. I. Vinylation of organic halides as a model for termination in cationic polymerization leading to vinyl end groups

An improved synthesis of trivinylaluminum (V₃Al) is described. The proton magnetic resonance (PMR) spectrum of V₃Al was recorded and analyzed. A new vinylation method involving the use of V₃Al as the vinylating agent has been developed, and the vinylation of organic halides by V₃Al was studied at ?30, ?50 and ?70°C. Primary alkyl chlorides, such as methyl and methylene chloride, do not react with V₃Al and were used as solvents. Secondary chlorides such as 2-chloropropane also do not react. t-Butyl chloride gives rise to t-butylethylene (70–98%), depending on reaction conditions, and the allylic chlorides, 3-chloro-1-butene, and 3-chloro-3-methyl-1-butene, yield the expected vinylated products and their isomers (～90%). Allyl and benzyl chloride do not react under the conditions tried. The reaction between V₃Al and the ditertiary dichloride 2,6-dichloro-2,6-dimethylheptane yields several isomeric C₁₃H₂₄ and C₁₁H₂₀ hydrocarbons; however, surprisingly, C₉H₁₆ does not form. The C₁₃ hydrocarbons arise by divinylation at the termini of the dichloride, while the C₁₁ hydrocarbons are formed by vinylation at one and proton elimination at the other terminus of the dichloride. The presence of unsaturated C₁₃H₂₄ and C₁₁H₂₀ isomers is most likely due to proton induced isomerization. These results are explained by a proximity effect involving vinylation at one end of the dichloride by V₃Al followed by rapid reaction of the second chlorine (mostly) by V₂AlCl generated in situ during the first vinylation in the proximity of the chloride. At the other chlorine terminus V₂AlCl causes either a second vinylation (leading to C₁₃ hydrocarbons) or a proton elimination (leading to C₁₁ hydrocarbons). The absence of C₉H₁₆ among the reaction products indicates that V₃Al exclusively effects vinylation. The RCl + V₃Al ← RV + V₂AlCl reaction may be regarded as a model for initiation followed by immediate termination in cationic olefin polymerization, a process leading to vinyl-ended polymers.     

Oxidation chemistry of uranium(III) complexes of Tpa: synthesis and structural studies of oxo,hydroxo, and alkoxo complexes of uranium(IV)

The crystal structure of the complex [U(tpa)(2)]I(3), 1 (tpa = tris[(2-pyridyl)methyl]amine), has been elucidated. The complex exists as only one enantiomer in the crystal leading to the chiral space group P2(1)2(1)2(1). The coordination geometry of the metal can be described as a distorted cube. Accidental oxidation of [U(tpa)(2)]I(3) led to the isolation of the unusual mononuclear bishydroxo complex of uranium(IV) [U(tpa)(2)(OH)(2)]I(2).3CH(3)CN, 2, which was structurally characterized. The controlled reaction of [U(tpa)(2)]I(3) with water resulted in the oxidation of the metal center and led to the formation of protonated tpa and of the trinuclear U(IV) oxo complex ([U(tpa)(mu-O)I](3)(mu(3)-I))I(2), 3. The solid state and solution structures of this trimer are reported. The pathway suggested for the formation of this complex is the oxidation of the [U(tpa)(2)]I(3) complex by H(2)O to form a U(IV) hydroxo complex which then decomposes, eliminating mono-protonated tpa. The comparison with the reported reaction with water of cyclopentadienyl derivatives points to a higher reactivity toward water reduction of the bis(tpa) complex with respect to the cyclopentadienyl derivatives. The reaction of U(III) with methanol in the presence of the supporting ligand tpa leads to formation of alkoxo complexes similarly to what is found for amide or cyclopentadienyl derivatives. The monomethoxide complex [U(tpa)I(3)(OMe)], 4, has been prepared in good yield by alcoholysis of the U(III) mono(tpa) complex. The crystal structure of this complex has been determined. The reaction of [U(tpa)(2)]I(3) with 2 equiv of methanol in acetonitrile allows the isolation of the bismethoxo complex of U(IV) [U(tpa)I(2)(OMe)(2)], 5, in 35-47% yield, which has been fully characterized. To account for the oxidation of U(III) to U(IV) the suggested mechanism assumes that hydrogen is evolved in both reactions.     

On Not Counting the Cost: Ad Hocness and Disconfirmation

I offer an account of ad hocness that explains why the adoption of an ad hoc auxiliary is accompanied by the disconfirmation of a hypothesis H. H must be conjoined with an auxiliary (or set of auxiliaries) a′, which is improbable antecedently given H, while ~H does not have this disability. This account renders it unnecessary to require, for identifying (bad) ad hocness, that either a′ or H have a posterior probability less than or equal to 0.5; there are also other reasons for abandoning that condition. I distinguish between formal ad hocness, which is bad in the probabilistic sense that it results in disconfirmation of H, and argumentative ad hocness, which actually involves bad reasoning on the part of a subject. The latter is what I call “not counting the cost.” This distinction allows us to see why the 0.5 condition appeared attractive in the first place. The concept of not counting the cost also has implications for other areas of research, including both a Bayesian concept of unfalsifiability and the classic epistemological question of the problem of the external world.     

Gold internal standard correction for elemental imaging of soft tissue sections by LA-ICP-MS: element distribution in eye microstructures

Laser ablation coupled to inductively coupled plasma mass spectrometry has been developed for the elemental imaging of Mg, Fe and Cu distribution in histological tissue sections of fixed eyes, embedded in paraffin, from human donors (cadavers). This work presents the development of a novel internal standard correction methodology based on the deposition of a homogeneous thin gold film on the tissue surface and the use of the ¹⁹⁷Au⁺ signal as internal standard. Sample preparation (tissue section thickness) and laser conditions were carefully optimized, and internal normalisation using ¹⁹⁷Au⁺ was compared with ¹³C⁺ correction for imaging applications. ²⁴Mg⁺, ⁵⁶Fe⁺ and ⁶³Cu⁺ distributions were investigated in histological sections of the anterior segment of the eye (including the iris, ciliary body, cornea and trabecular meshwork) and were shown to be heterogeneously distributed along those tissue structures. Reproducibility was assessed by imaging different human eye sections from the same donor and from ten different eyes from adult normal donors, which showed that similar spatial maps were obtained and therefore demonstrate the analytical potential of using ¹⁹⁷Au⁺ as internal standard. The proposed analytical approach could offer a robust tool with great practical interest for clinical studies, e.g. to investigate trace element distribution of metals and their alterations in ocular diseases.