Dynamics of Arabidopsis thaliana soluble proteome in response to different nutrient culture conditions

In an effort to determine the best extraction procedure compatible with the high-reproducible 2-DE, different methods of soluble protein extraction from Arabidopsis cell culture suspensions grown in Gamborg B5 medium were tested. A reference 2-DE map was established for this soluble extract revealing 1184 spots. The most abundant protein spots were excised, trypsin-digested, and mass spectra obtained via MALDI-TOF and/or LC coupled to ESI-MS. Three hundred and thirty one proteins were identified and their functions were defined based on sequence comparisons and classified in different protein families. In order to analyze the impact of culture medium on the Arabidopsis proteome, we performed the 2-DE map from Arabidopsis cell suspensions cultured in another growth medium Murashige and Skoog (M-S) and 327 major spots were identified. Using PDQuest imaging analysis, significant increases in the amount of several housekeeping enzymes, stress/defense proteins, and heat shock proteins were found in M-S medium. Modified expression of certain proteins and detection of new isoforms involved in nitrate assimilation, nitrogen, and sulfur metabolism were also observed in the M-S medium. This study provides the first 2-DE maps of the soluble proteome of Arabidopsis cell suspensions. The comparative analysis of the Arabidopsis proteome in respect to different nutrient supplies shows that the culture medium may significantly influence the expression pattern of major soluble proteins in Arabidopsis cells. This work also constitutes an important step for further proteomic analysis concerning cell responses to abiotic or biotic stresses.     

Pharmacomodulation of a ligand targeting the HBV capsid hydrophobic pocket

Hepatitis B virus (HBV) is a small enveloped retrotranscribing DNA virus and an important human pathogen. Its capsid-forming core protein (Cp) features a hydrophobic pocket proposed to be central notably in capsid envelopment. Indeed, mutations in and around this pocket can profoundly modulate, and even abolish, secretion of enveloped virions. We have recently shown that Triton X-100, a detergent used during Cp purification, binds to the hydrophobic pocket with micromolar affinity. We here performed pharmacomodulation of pocket binders through systematic modifications of the three distinct chemical moieties composing the Triton X-100 molecule. Using NMR and ITC, we found that the flat aromatic moiety is essential for binding, while the number of atoms of the aliphatic chain modulates binding affinity. The hydrophilic tail, in contrast, is highly tolerant to changes in both length and type. Our data provide essential information for designing a new class of HBV antivirals targeting capsid–envelope interactions.

Small-molecule binding to the Hepatitis B virus core protein hydrophobic pocket, a possible strategy for targeting viral particle assembly.     

Synthesis of 9- and 27-armed tetrakis(diperoxotungsto)phosphate-cored dendrimers and their use as recoverable and reusable catalysts in the oxidation of alkenes, sulfides, and alcohols with hydrogen Peroxide

A series of 3- and 9-armed dendrons, functionalized at the focal position to quaternary ammonium salts, were synthesized and characterized. The reaction of these ammonium dendrons with the heteropolyacid H(3)PW(12)O(40) in the presence of hydrogen peroxide led to a family of 9- and 27-armed air-stable polyoxometalate (POM)-cored dendrimers containing a catalytically active trianionic POM species [PO(4)[WO(O(2))(2)](4)](3-) in the core. These POM-cored dendrimers are air-stable, efficient, recoverable, and reusable catalysts for the selective oxidation of alkenes to epoxides, sulfides to sulfones, and alcohols to ketones, in an aqueous/CDCl(3) biphasic system with hydrogen peroxide as the primary oxidant. A study of the countercation effects showed that the dendritic structure increased the stability of the POM species and facilitated the recovery of the catalyst up to the eighth cycle, whereas the increased bulkiness around the POM center led to a negative kinetic dendritic effect. Within the 9-armed POM-cored dendrimer series, the reaction kinetics were susceptible to the nature of the peripheral endgroups. Indeed, the 9-armed n-propyl-terminated POM-cored dendrimer was identified as the most active catalyst. In addition, the results obtained with POM-cored dendrimers versus tetraalkylammonium POMs ([[n-(C(8)H(17))(3)NCH(3)](+)](3)[PO(4)[WO(O(2))(2)](4)](3-) and [[nC(18)H(37)(75 %) + nC(16)H(33)(25 %)](2)N(CH(3))(2)](+)](3)[PO(4)[WO(O(2))(2)](4)](3-)) clearly reveal that the dendritic structures are more stable than their nondendritic counterparts. After the reactions were complete, the dendrimer catalysts were easily recovered and recycled without a discernable lost of activity, whereas attempts to recover tetraalkylammonium POMs gave unsatisfactory results. A significant advantage of the dendritic structures is that they enable the recovery and recyclability of the POM catalyst, in contrast to the other tetraalkylammonium POMs.     

From simple monopyridine clusters [Mo6Br13(Py-R)][n-Bu4N] and hexapyridine clusters [Mo6X8(Py-R)6][OSO2CF3]4 (X = Br or I) to cluster-cored organometallic stars, dendrons, and dendrimers

Hexasubstitution of apical triflate ligands in the octahedral clusters [M]2[Mo6X8(CF3SO3)6] (M = n-Bu4N or Cs, X = Br or I) and monosubstitution in [n-Bu4N]2[Mo6Br13(CF3SO3)] was carried out in tetrahydrofuran at 60 degrees C with simple pyridines and then extended to organometallic pyridines, yielding cluster-cored stars, and to dendronic polyallyl- and polyferrocenylpyridines, yielding cluster-cored polyallyl and polyferrocenyl dendrimers and dendrons. The orange pyridine-substituted clusters, whose pyridine protons are deshielded in 1H NMR (a practical tool for characterization), are air-stable and thermally stable with simple pyridines, light- and air-sensitive with organometallic pyridines, and air-fragile and thermally fragile with large dendronized pyridines.     

How stereochemistry influences the taste of wine: Isolation,characterization and sensory evaluation of lyoniresinol stereoisomers

Wine expresses its beauty by sending a sensory message to the taster through molecules coming from grapes, yeast metabolism or oak wood. Among the compounds released during barrel aging, lyoniresinol has been recently reported as a relevant contributor to wine bitterness. As this lignan contains three stereogenic carbons, this work aimed at investigating the influence of stereochemistry on wine taste by combining analytical and sensorial techniques. First, an oak wood extract was screened by Liquid Chromatography–High Resolution Mass Spectrometry to target isomers separable in a symmetric environment and a diastereoisomer called epi-lyoniresinol was isolated for the first time. Then, an original racemic resolution based on natural xylose-derivatives was carried out to obtain lyoniresinol enantiomers. Chiroptical spectroscopic measurements associated with theoretical calculations allowed the unambiguous determination of their absolute configuration. The taste properties of all these stereoisomers revealed that only one lyoniresinol enantiomer is strongly bitter whereas the other one is tasteless and the diastereoisomer is slightly sweet. The presence of these three compounds was established in an oaked Bordeaux wine by chiral and non-chiral chromatography, suggesting the significant influence of stereochemistry on wine taste.     

Determination of rifampicin in human plasma by high‐performance liquid chromatography coupled with ultraviolet detection after automatized solid–liquid extraction

A precise and accurate high‐performance liquid chromatography (HPLC) quantification method of rifampicin in human plasma was developed and validated using ultraviolet detection after an automatized solid‐phase extraction. The method was validated with respect to selectivity, extraction recovery, linearity, intra‐ and inter‐day precision, accuracy, lower limit of quantification and stability. Chromatographic separation was performed on a Chromolith RP₈ column using a mixture of 0.05 m acetate buffer pH 5.7–acetonitrile (35:65, v/v) as mobile phase. The compounds were detected at a wavelength of 335 nm with a lower limit of quantification of 0.05 mg/L in human plasma. Retention times for rifampicin and 6,7‐dimethyl‐2,3‐di(2‐pyridyl) quinoxaline used as internal standard were respectively 3.77 and 4.81 min. This robust and exact method was successfully applied in routine for therapeutic drug monitoring in patients treated with rifampicin.     

Influence of binary surfactant mixtures on the rheology of associative polymer solutions

Hydrophobically modified alkali-soluble emulsion polymers (HASE) are a class of comblike associative polymers that can impart high viscosities to aqueous solutions. The rheology of HASE solutions can be tuned by the addition of surfactants, such as nonylphenol ethoxylates (NP e), where e is the length of the hydrophilic (ethoxylate) chain. While previous studies have considered individual surfactants, our focus here is on binary surfactant mixtures. We find that equimolar NP4-NP12 mixtures significantly enhance the zero-shear viscosities of HASE solutions as compared to equivalent amounts of NP8, especially at high overall surfactant concentrations. Dynamic rheological measurements suggest that the higher viscosities are due to increases in the lifetime of hydrophobic junctions in the polymer-surfactant network. In contrast to the above results, equimolar NP4-NP8 mixtures are rheologically identical to equivalent solutions of NP6. The differences between the two sets of mixtures are further correlated with cloud point measurements and thereby with the overall hydrophilic-lipophilic balance (HLB) of the surfactant system.     

Synthesis and Characterization of Vanillin-Based π-Conjugated Polyazomethines and Their Oligomer Model Compounds

The synthesis of π-conjugated polymers via an environmentally friendly procedure is generally challenging. Herein, we describe the synthesis of divanillin-based polyazomethines, which are derived from a potentially bio-based monomer. The polymerization is performed in 5 min under microwave irradiation without any metallic catalyst, with water as the only by-product. The vanillin-based polyazomethines were characterized by SEC, TGA, and UV-Vis spectroscopy. Model compounds were designed and characterized by X-ray diffraction and UV-Vis spectroscopy. The structure/properties study of vanillin-based azomethines used as models allowed us to unequivocally confirm the E configuration and to highlight the cross-conjugated nature of divanillin-based polymers.     

Palladium-mediated fragmentation of meta photocycloadducts using carbon based electrophiles. Part 1

Substituted benzene derived meta photocycloadducts have been shown to undergo a fragmentation/arylation reaction under Heck reaction conditions to give bridged bicyclo[3.2.1] compounds in a highly atom-efficient manner. When an anisole derived meta photocycloadduct is used, a bridgehead ketone is generated. However, if an alkylbenzene derived meta photocycloadduct is used, a bridgehead alkene is formed. This strategy has been used to create novel enol ether and transient allyl silane compounds.