Importance of the isopropylidene terminal of geranylgeranyl group for the formation of tetraether lipid in methanogenic archaea

Labeling experiments using several deuterated lipids were pursued to study the biosynthesis of macrocyclic isoprenoidal lipids of thermophilic methanogenic archaea, Methanothermobacter thermautotrophicus. The isopropylidene terminal of geranylgeranyl group of monomeric precursor appeared to be important for the CC bond formation at the hydrophobic end in the macrocyclic lipids. A mechanism involving a radical trigger at the allylic methyl group is proposed for this CC bond formation.     

Wild ginseng grows in Myanmar

Ginseng, the underground parts of plants of Panax species, has been used in oriental traditional medicine for centuries. Unfortunately, because of extensive exploitation over thousands of years, the natural source of these species has been almost exhausted. Recently, we have found a wild ginseng growing in Myanmar. Here, by a combination of chemical composition study and gene sequence analysis, we unambiguously demonstrate that the wild ginseng is actually P. zingiberensis, commonly known as ginger ginseng. This ginseng was an indigenous to the southwestern China. However, now it is seriously threatened to brink of extinction and is put on the highest level of protection in China. Therefore, an appropriate protection measure is highly recommended to preserve this valuable resource, since this Myanmar ginseng might turn out to be the last P. zingiberensis, which could ever be seen in the planet.     

Apparent molal volumes of phosphonium halides at 15, 25 and 35°C

The densities of aqueous solutions of the phosphonium halides, Bu _4-n Ph _n PX(n=0–4), some of which were synthesized from the phosphines, were measured at 15, 25 and 35°C. Partial molal volumes at infinite dilution, , and B _v coefficients for the apparent molal volumes were determined at each temperature. For the first four cations varies little with n. For all salts B _v are negative but become less negative with increasing n. The temperature dependence of B _v is positive for butyl-rich salts (n<2) but negative for phenyl-rich salts (n>1). Also it appears that is relatively large for phenyl-rich cations in comparison with that for butyl-rich cations.     

Simultaneous ultramicrodetermination of heterogeneous halogens in organic compounds

The simultaneous ultramicrodetermination of heterogeneous halogens in organic compounds was carried out by the potentiometric titration with 0.002 M silver nitrate after the sample was decomposed by the flask combustion method. In examination of the titration, it was found that clear potential break at the end point was obtained by controlling the delivery speed of the titrant at 0.2 ml/min or slower and the temperature of the solution to be titrated at ca. 10 °C when chloride ion is present. The error due to coprecipitation during the titration and the effect of the mole ratio of heterogeneous halide ions in the sample solution was examined and discussed. The analysis of organic halogen compounds resulted in an error of within 0.4% and standard deviation of less than 0.25%.     

Cloning, sequencing, and functional analysis of the biosynthetic gene cluster of macrolactam antibiotic vicenistatin in Streptomyces halstedii

Vicenistatin, an antitumor antibiotic isolated from Streptomyces halstedii, is a unique 20-membered macrocyclic lactam with a novel aminosugar vicenisamine. The vicenistatin biosynthetic gene cluster (vin) spanning approximately 64 kbp was cloned and sequenced. The cluster contains putative genes for the aglycon biosynthesis including four modular polyketide synthases (PKSs), glutamate mutase, acyl CoA-ligase, and AMP-ligase. Also found in the cluster are genes of NDP-hexose 4,6-dehydratase and aminotransferase for vicenisamine biosynthesis. For the functional confirmation of the cluster, a putative glycosyltransferase gene product, VinC, was heterologously expressed, and the vicenisamine transfer reaction to the aglycon was chemically proved. A unique feature of the vicenistatin PKS is that the loading module contains only an acyl carrier protein domain, in contrast to other known PKS-loading modules containing certain activation domains. Activation of the starter acyl group by separate polypeptides is postulated as well.     

Specifications of a neutron exposure accelerator system for biological effects experiments (NASBEE) in NIRS

We developed a neutron irradiation facility, neutron exposure accelerator system for biological effect experiments (NASBEE) for biological studies in National Institute of Radiological Sciences, Japan. Irradiation field of 2 MeV average neutrons generated by a Be(d–n)B reaction is established. Dose uniformity of 240 mm in diameter irradiation field is producible within ±2.5% with a dose rate of 0.87 Gy/h at sample target distance of 1170 mm. Two irradiation rooms, a specific pathogen-free (SPF) conditioned one and a conventional, are now available. Irradiation protocols for in vitro experiments are now established and demonstrated by obtaining a relative biological effectiveness (RBE) of cell inactivation measured to be 3.54 with 10% survival dose (D₁₀).     

Membrane properties of archaeal macrocyclic diether phospholipids

Several biophysical properties of four synthetic archaeal phospholipids [one polyprenyl macrocyclic lipid A and three polyprenyl double-chain lipids (B, C, D) bearing zero, one or four double bonds in each chain] were studied using differential scanning calorimetry, electron and optical microscopies, stopped-flow/light scattering and solid-state 2H-NMR techniques. These phospholipids gave a variety of self-organized structures in water, in particular vesicles and tubules. These assemblies change in response to simple thermal convection. Some specific membrane properties of these archaeal phospholipids were observed: They are in a liquid-crystalline state over a wide temperature range; the dynamics of their polyprenyl chains is higher than that of n-acyl chains; the water permeability of the membranes is lower than that of n-acyl phospholipid membranes. It was also found that macrocyclization remarkably improves the barrier properties to water and the membrane stability. This may be related to the adaptation of Methanococcus jannaschii to the extreme conditions of the deep-sea hydrothermal vents.     

Facile synthesis of chiral glycine using D-glucose as a chiral template

A facile synthetic method of chiral glycine and a new access to chiral acetic acid based on a concept of chirality transfer from glucose are described.     

Spectinabilin,a new nitro-containing metabolite isolated from streptomyces spectabilis

A new nitro-containing metabolite, spectinabilin, was isolated from the crude streptovaricin complex produced by Streptomyces spectabilis. The structure was determined by degradation studies and spectral properties. A possible biosynthetic pathway of the metabolite is discussed in relation to the biosynthesis of the streptovaricins.     

Internal waves in a two‐layer system using fully nonlinear internal‐wave equations

In order to understand the nonlinear effect in a two‐layer system, fully nonlinear strongly dispersive internal‐wave equations, based on a variational principle, were proposed in this study. A simple iteration method was used to solve the internal‐wave equations in order to solve the equations stably. The applicability of the proposed numerical computation scheme was confirmed to agree with linear dispersion relation theoretically obtained from variational principle. The proposed computational scheme was also shown to reproduce internal waves including higher‐order nonlinear effect from the analysis of internal solitary waves in a two‐layer system. Furthermore, for the second‐order numerical analysis, the balance of nonlinearity and dispersion was found to be similar to the balance assumed in the KdV theory and the Boussinesq‐type equations. Copyright © 2009 John Wiley & Sons, Ltd.