Rapid DNA hybridization analysis using a PDMS microfluidic sensor and a molecular beacon.

A rapid DNA analysis has been developed based on a fluorescence intensity change of a molecular beacon in a PDMS microfluidic channel. Recently, we reported a new analytical method of DNA hybridization involving a PDMS microfluidic sensor using fluorescence energy transfer (FRET). However, there are some limitations in its application to real DNA samples because the target DNA must be labelled with a suitable fluorescent dye. To resolve this problem, we have developed a new DNA microfluidic sensor using a molecular beacon. By monitoring the change in the restored fluorescence intensity along the channel length, it is possible to rapidly detect any hybridization of the molecular beacon to the target DNA. In this case, the target DNA does not need to be labelled. Our experimental results demonstrate that this microfluidic sensor using a molecular beacon is a promising diagnostic tool for rapid DNA hybridization analysis.     

Self-organized ZnAl2O4 nanostructures grown on -sapphire

Self-organized ZnAl₂O₄ nanostructures with the appearance (in SEM) of high aspect ratio horizontal nanowires are grown on uncatalysed c-sapphire by vapour phase transport. The nanostructures grow as three equivalent crystallographic variants on c-sapphire. Raman and cathodoluminescence spectroscopy confirm that the nanostructures are not ZnO and TEM shows that they are the cubic spinel, zinc aluminate, ZnAl₂O₄, formed by the reaction of Zn and O with the sapphire substrate.     

Working group report: Neutrino and astroparticle physics

This is the report of neutrino and astroparticle physics working group at WHEPP-7. Discussions and work on CP violation in long baseline neutrino experiments, ultra high energy neutrinos, supernova neutrinos and water Cerenkov detectors are discussed.     

Spectral distributions in nuclei: General principles and applications

The subject of spectral distribution methods where one derives and applies the locally smoothed forms of observables in nuclei is briefly reviewed. It is well understood that the local forms (with respect to energy) of the level density function, expectation values and strength densities are Gaussian, linear (or ratio of Gaussians) and a bivariate Gaussian respectively. To accomodate symmetries in the above forms, one has to deal with multivariate distributions in general; for example the angular-momentum (J) decomposition leads to a bivariate Gaussian form for the level density. These results extend to indefinitely large spaces by method of partitioning and they generate convolution forms. The origin of these remarkable spectral properties is discussed and shell model examples are given to substantiate their applicability to nuclear systems. Spectral distribution theory is a practical, usable theory because the smoothed forms are defined in terms of traces of low particle-rank operators, and the trace information propagates. Finally we discuss the application of the spectral methods for a wide range of nuclear problems; these include binding energies, orbit occupancies, electromagnetic andβ-decay sum rule quantities, analysis of operators, symmetry breaking, numerical level densities, and determination of bounds on time-reversal non-invariant part of nucleon-nucleon interaction.     

An evaluation of exogenous application of protoporphyrin IX and its dimethyl ester as a photodynamic diagnostic agent in poorly differentiated human nasopharyngeal carcinoma

5-Aminolevulinic acid and its esterified analogues have been under much investigation to enhance the endogenous production of protoporphyrin IX (PpIX) in tumor cells. However, in this work, we studied the in vitro and in vivo efficacy of exogenously administered PpIX and its esterified analogue, PpIX dimethyl ester (PME), in poorly differentiated human nasopharyngeal carcinoma (NPC/CNE-2) as a photodynamic diagnostic (PDD) agent. NPC/CNE-2 at its earliest time, 1 h after incubation with PME in in vitro studies, has exhibited 64% (P <0.01) higher tumor to normal cell (T/N) fluorescence ratio than with PpIX. In an in vivo mouse xenograft model, comparable photosensitizer concentration in tumor after intravenous administration was observed at 1-3 h time points, but at 9 h, PME had 31% (P=0.05) greater concentration in tumor compared with PpIX. In addition, by constituting PME and PpIX in different topical gel composites, of which, PME gel composition of 8:2 Plasdone and Gantrez resulted in the highest T/N ratio at 6 h after application (34%; P <0.05) in comparison with other gel composites. Evaluation of PME and PpIX constituted in the delivery vehicles investigated showed comparable selectivity for tumor at 1-3 h, thus neither photosensitizer is more efficient than the other for PDD at the early time points; however, beyond 6 h, PME had higher selectivity for tumor compared with PpIX. Thus, further investigation is warranted to improve the drug delivery vehicle for greater tumor selectivity at a shorter incubation time.     

Chain-transfer constant of fluoroalcohols

Chain transfer constants of some fluoroalcohols [HCF₂(CF₂)_n?1CH₂OH, n = 2, 4, 6] in the catalyzed polymerization of vinyl acetate, styrene, acrylonitrile, and methyl methacrylate at 60°C have been evaluated by a method based on degree of polymerization. Since fluoroalcohols are normally nonsolvents for polymers, a homogeneous reaction phase is maintained by carrying out the polymerization in benzene (except in case of acrylonitrile, where no solvent was used). The transfer constants vary, depending on the reactivity as well as the polarity of the radicals, in the following order: vinyl acetate > styrene > methyl methacrylate > acrylonitrile. Of the three fluoroalcohols studied, the transfer constants increase with the increasing value of n. The results have been interpreted in terms of polar structure contribution in the transition state of the transfer reactions.     

Scaling of decay lengths for surface states in the gaps of one-dimensional semi-infinite superlattices

We look at some one-dimensional semi-infinite superlattices with an underlying Hamiltonian that is of the nearest neighbour, tight binding type. A real space rescaling procedure which is exact in one dimension is applied to obtain the location of the subbands. It has been found that these subbands never overlap in 1D, and we interpret this as a band repulsion effect. Relevance in the case of a disordered system where this band repulsion crosses over to the well-known level repulsion is discussed. Then with a proper matching at the boundary we solve for the sets of denumerably infinite number of decaying solutions (the surface states) in the gaps. These types of states have been proposed quite some time ago. We look at detail theirexact analytical solutions in 1D and find that their decay lengths near the band edges diverge as |E–E _b|^–v, wherev=1/2 andE _b is the nearest band edge. The decay lengths and their divergence exponent match extremely well with those obtained from transfer matrix method. Some recent experiments on quantum well structures seem to have observed such states.     

An improved scheme for the identification of antigens recognized by specific antibodies in two-dimensional gel electrophoresis and immunoblotting

This paper describes an improved scheme for the identification of antigens in crude extracts recognized by specific antibodies when analyzed by a combination of two-dimensional gel electrophoresis and immunoblotting. First, protein components in gels are electrophoretically transferred to a polyvinylidene difluoride membrane which does not shrink or change dimensions in organic solvents. The efficiency of transfer and the localization of sample proteins on the membrane are checked and recorded by staining the blotting membrane with Fast Green FCF and recording the profile on a transparency. After blocking and the immunoassay, the results are recorded by photography. The sites of immune reaction are marked and the same membrane is restained briefly with Coomassie Brilliant Blue R-250 for the protein profile. Thus antigens in complex mixtures, recognized by antibodies of interest, can easily be identified from the restained membrane. If the whole protein profile is not well demonstrated, when used in combination with the profile recorded on the transparency, spots appearing on the restained membrane can still be used as useful landmarks in the final unequivocal antigenic identification. This improved scheme circumvents problems arising from membrane shrinkage and difficulties in accurately matching immunoreactive spots by conventional procedures and thus provides an accurate, simple and fast approach in the identification of antigens after immunoblotting.