Crystallization of Arthrobacter sp. strain 1C N-(1-D-carboxyethyl)-L-norvaline dehydrogenase and its complex with NAD+

The novel NAD+-linked opine dehydrogenase from a soil isolate Arthrobacter sp. strain 1C belongs to an enzyme superfamily whose members exhibit quite diverse substrate specificites. Crystals of this opine dehydrogenase, obtained in the presence or absence of co-factor and substrates, have been shown to diffract to beyond 1.8 ? resolution. X-ray precession photographs have established that the crystals belong to space group P21212, with cell parameters a = 104.9, b = 80.0, c = 45.5 ? and a single subunit in the asymmetric unit. The elucidation of the three-dimensional structure of this enzyme will provide a structural framework for this novel class of dehydrogenases to enable a comparison to be made with other enzyme families and also as the basis for mutagenesis experiments directed towards the production of natural and synthetic opine-type compounds containing two chiral centres.     

Ultrafast electron-phonon coupling in hollow gold nanospheres

Electronic energy relaxation in hollow gold nanospheres (HGNs) was studied using femtosecond time-resolved transient absorption spectroscopy. A range of HGNs having outer diameter-to-shell thickness aspect ratios of 3.5 to 9.5 were synthesized by a galvanic replacement method. The HGNs exhibited electron-phonon relaxation times that decreased from 1.18 ± 0.16 to 0.59 ± 0.08 ps as the aspect ratio increased over this range. The corresponding electron-phonon coupling constants, G, ranged from (1.67 ± 0.22) to (3.33 ± 0.45) × 10(16) W m(-3) K(-1). Electron-phonon coupling was also determined for solid gold nanospheres (SGNs) with diameters spanning 20 nm to 83 nm; no size dependence was observed for these structures. The HGNs with high aspect ratios exhibited larger electron-phonon coupling constants than the SGNs, whose average G value was (1.9 ± 0.2) × 10(16) W m(-3) K(-1). By comparison, low-aspect ratio HGNs exhibited values comparable to SGNs. The electron-phonon coupling of high-aspect ratio HGNs was also influenced by the surrounding fluid dielectric; slightly smaller G values were obtained when methanol was the solvent as opposed to water. This coupling enhancement observed for high-aspect ratio HGNs was attributed to the large surface to volume ratio of these structures, which results in non-negligible contributions from the environment.     

Controlled plasmon resonance properties of hollow gold nanosphere aggregates

Hollow gold nanospheres (HGNs) ranging from 29.9 nm/8.5 nm (outer diameter/shell thickness) to 51.5 nm/4.5 nm and having aspect ratios spanning 3.5-11.7 were employed to investigate the ability to tailor charge oscillations of HGN aggregates by systematic variation of particle aspect ratio, interparticle gap, and nanosphere inner surface spatial separation. Altering these properties in aggregated HGNs led to control over the interparticle plasmon resonance. Thiol-mediated aggregation was accomplished using either ethanedithiol or cysteine, resulting in dimeric structures in which monomer subunits were spatially separated by <3 ? and 1.2 ± 0.7 nm, respectively. Particle dimensions and separation distances were confirmed by transmission electron microscopy. Experimental absorption spectra obtained for high-aspect ratio nanospheres dimerized using ethanedithiol exhibited an obvious blue shift of the surface plasmon resonance (SPR) relative to that observed for the native, monomeric HGN. This spectral difference likely results from a charge-transfer plasmon resonance at the dimer interface. The extent of the blue shift was dependent upon shell thickness. Dimers comprised of thin-shelled HGNs exhibited the largest shift; aggregates containing HGNs with thick shells (≥7 nm) did not display a significant SPR shift when the individual particles were in contact. By comparison, all cysteine-induced aggregates examined in this study displayed large interparticle gaps (>1 nm) and a red-shifted SPR, regardless of particle dimensions. This effect can be described fully by a surface mode coupling model. All experimental measurements were verified by finite difference time domain calculations. In addition, simulated electric field maps highlighted the importance of the inner HGN surface in the interparticle coupling mechanism. These findings, which describe structure-dependent SPR properties, may be significant for applications derived from the plasmonic nanostructure platform.     

Photodissociation of thioglycolic acid studied by femtosecond time-resolved transient absorption spectroscopy

Steady-state and time-resolved spectroscopies were employed to study the photodissociation of both the neutral (HS-CH(2)-COOH) and doubly deprotonated ((-)S-CH(2)-COO(-)) forms of thioglycolic acid (TGA), a common surface-passivating ligand used in the aqueous synthesis and organization of semiconducting nanostructures. Room temperature UV-Vis absorption spectroscopy indicated strong absorption by the S(1) and S(2) excited states at 250 nm and 185 nm, respectively. The spectrum also contained a weaker absorption band that extended to approximately 550 nm, which was assigned to the π(CO) (*)←n(O) transition. Femtosecond time-resolved transient absorption spectroscopy was performed on TGA using 400 nm excitation and a white-light continuum probe to provide the temporally and spectrally resolved data. Both forms of TGA underwent a photoinduced dissociation from the excited state to form an α-thiol-substituted acyl radical (α-TAR, S-CH(2)-CO(●)). For the acidic form of TGA, radical formation occurred with an apparent time constant of 60 ± 5 fs; subsequent unimolecular decay took 400 ± 60 fs. Similar kinetics were observed for the deprotonated form of TGA (70 ± 10 fs radical formation; 420 ± 40 fs decay). The production of the α-TAR was corroborated by the observation of its characteristic optical absorption. Time-resolved data indicated that the photoinduced dissociation of TGA via cleavage of the C-OH bond occurred rapidly (≤100 fs). The prevalence of TGA in aqueous semiconducting nanoparticles makes its absorption in the visible spectral region and subsequent dissociation key to understanding the behavior of nanoscale systems.     

Magnetic dipolar interactions in solid gold nanosphere dimers

We report the first observation of a magnetic dipolar contribution to the nonlinear optical (NLO) response of colloidal metal nanostructures. Second-order NLO responses from several individual solid gold nanosphere (SGN) dimers, which we prepared by a bottom-up approach, were examined using polarization-resolved second harmonic generation (SHG) spectroscopy at the single-particle level. Unambiguous circular dichroism in the SH signal was observed for most of the dimeric colloids, indicating that the plasmon field located within the interparticle gap was chiral. Detailed analysis of the polarization line shapes of the SH intensities obtained by continuous polarization variation suggested that the effect resulted from strong magnetic-dipole contributions to the nanostructure's optical properties.     

Stark-assisted population control of coherent CS(2) 4f and 5p Rydberg wave packets studied by femtosecond time-resolved photoelectron spectroscopy

A two-color (3+1(')) pump-probe scheme is employed to investigate Rydberg wave packet dynamics in carbon disulfide (CS(2) (*)). The state superpositions are created within the 4f and 5p Rydberg manifolds by three photons of the 400 nm pump pulse, and their temporal evolution is monitored with femtosecond time-resolved photoelectron spectroscopy using an 800 nm ionizing probe pulse. The coherent behavior of the non-stationary superpositions are observed through wavepacket revivals upon ionization to either the upper (12) or lower (32) spin-orbit components of CS(2) (+). The results show clearly that the composition of the wavepacket can be efficiently controlled by the power density of the excitation pulse over a range from 500 GWcm(2) to 10 TWcm(2). The results are consistent with the anticipated ac-Stark shift for 400 nm light and demonstrate an effective method for population control in molecular systems. Moreover, it is shown that Rydberg wavepackets can be formed in CS(2) with excitation power densities up to 10 TWcm(2) without significant fragmentation. The exponential 1e population decay (T(1)) of specific excited Rydberg states are recovered by analysis of the coherent part of the signal. The dissociation lifetimes of these states are typically 1.5 ps. However, a region exhibiting a more rapid decay ( approximately 800 fs) is observed for states residing in the energy range of 74 450-74 550 cm(-1), suggestive of an enhanced surface crossing in this region.     

Intercalation of Toluidines into α-Zirconium Hydrogenphosphate

Intercalates of o-, m-, and p-toluidine into α-Zr(HPO₄)₂ · H₂O were prepared and characterized by powder X-ray diffraction, thermogravimetric analysis and infrared spectroscopy. As follows from IR, toludine molecules are protonated in the interlayer space. Toluidine molecules are arranged in a bimolecular way in the intercalates containing more than 1.5 toluidine molecules per Zr atom. On the other hand, a monolayer of the toluidine molecules is supposed in the intercalates with less than one toluidine molecule per Zr atom.     

On the pH-dependent quenching of quantum dot photoluminescence by redox active dopamine

We investigated the charge transfer interactions between luminescent quantum dots (QDs) and redox active dopamine. For this, we used pH-insensitive ZnS-overcoated CdSe QDs rendered water-compatible using poly (ethylene glycol)-appended dihydrolipoic acid (DHLA-PEG), where a fraction of the ligands was amine-terminated to allow for controlled coupling of dopamine-isothiocyanate onto the nanocrystal. Using this sample configuration, we probed the effects of changing the density of dopamine and the buffer pH on the fluorescence properties of these conjugates. Using steady-state and time-resolved fluorescence, we measured a pronounced pH-dependent photoluminescence (PL) quenching for all QD-dopamine assemblies. Several parameters affect the PL loss. First, the quenching efficiency strongly depends on the number of dopamines per QD-conjugate. Second, the quenching efficiency is substantially increased in alkaline buffers. Third, this pH-dependent PL loss can be completely eliminated when oxygen-depleted buffers are used, indicating that oxygen plays a crucial role in the redox activity of dopamine. We attribute these findings to charge transfer interactions between QDs and mainly two forms of dopamine: the reduced catechol and oxidized quinone. As the pH of the dispersions is changed from acidic to basic, oxygen-catalyzed transformation progressively reduces the dopamine potential for oxidation and shifts the equilibrium toward increased concentration of quinones. Thus, in a conjugate, a QD can simultaneously interact with quinones (electron acceptors) and catechols (electron donors), producing pH-dependent PL quenching combined with shortening of the exciton lifetime. This also alters the recombination kinetics of the electron and hole of photoexcited QDs. Transient absorption measurements that probed intraband transitions supported those findings where a simultaneous pronounced change in the electron and hole relaxation rates was measured when the pH was changed from acidic to alkaline.     

The free energy of a reaction coordinate at multiple constraints: a concise formulation

The free energy as a function of the reaction coordinate (rc) is the key quantity for the computation of equilibrium and kinetic quantities. When it is considered as the potential of mean force, the problem is the calculation of the mean force for given values of the rc. We reinvestigate the PMCF (potential of mean constraint force) method which applies a constraint to the rc to compute the mean force as the mean negative constraint force and a metric tensor correction. The latter allows for the constraint imposed to the rc and possible artefacts due to multiple constraints of other variables which for practical reasons are often used in numerical simulations. Two main results are obtained that are of theoretical and practical interest. First, the correction term is given a very concise and simple shape which facilitates its interpretation and evaluation. Secondly, a theorem describes various rcs and possible combinations with constraints that can be used without introducing any correction to the constraint force. The results facilitate the computation of free energy by molecular dynamics simulations.