Click chemistry to construct fluorescent oligonucleotides for DNA sequencing

"Click chemistry" 1,3-dipolar cycloaddition between alkynyl 6-carboxyfluorescein (FAM) and azido-labeled single-stranded (ss) DNA was carried out under aqueous conditions to produce FAM-labeled ssDNA in quantitative yield. The FAM-labeled ssDNA was successfully used as a primer to produce DNA sequencing products with single-base resolution in a capillary electrophoresis DNA sequencer with laser-induced fluorescence detection.     

Conjugate addition of organocopper reagents in dichloromethane to α,β-unsaturated esters

Organocopper reagents in conjunction with Lewis acid activators provide greater stability than traditional cuprate reagents while maintaining the reactivity needed for conjugate addition reactions in dichloromethane. Whereas cuprates engage in cross-coupling pathways, organocopper nucleophiles are more selective for conjugate addition. The utility of organocopper reagents in dichloromethane for the conjugate addition to α,β-unsaturated esters is expanded upon herein.     

Dual Metal Active Sites in an Ir1/FeOx Single-Atom Catalyst: A Redox Mechanism for the Water-Gas Shift Reaction

Herein, we report a theoretical and experimental study of the water-gas shift (WGS) reaction on Ir₁/FeO_x single-atom catalysts. Water dissociates to OH* on the Ir₁ single atom and H* on the first-neighbour O atom bonded with a Fe site. The adsorbed CO on Ir₁ reacts with another adjacent O atom to produce CO₂, yielding an oxygen vacancy (O_vac). Then, the formation of H₂ becomes feasible due to migration of H from adsorbed OH* toward Ir₁ and its subsequent reaction with another H*. The interaction of Ir₁ and the second-neighbouring Fe species demonstrates a new WGS pathway featured by electron transfer at the active site from Fe³⁺−O⋅⋅⋅Ir²⁺−O_vac to Fe²⁺−O_vac⋅⋅⋅Ir³⁺−O with the involvement of O_vac. The redox mechanism for WGS reaction through a dual metal active site (DMAS) is different from the conventional associative mechanism with the formation of formate or carboxyl intermediates. The proposed new reaction mechanism is corroborated by the experimental results with Ir₁/FeO_x for sequential production of CO₂ and H₂.     

GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates (S_n) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.     

Dual Metal Active Sites in an Ir1/FeOx Single‐Atom Catalyst: A Redox Mechanism for the Water‐Gas Shift Reaction

Herein, we report a theoretical and experimental study of the water‐gas shift (WGS) reaction on Ir₁/FeO_x single‐atom catalysts. Water dissociates to OH* on the Ir₁ single atom and H* on the first‐neighbour O atom bonded with a Fe site. The adsorbed CO on Ir₁ reacts with another adjacent O atom to produce CO₂, yielding an oxygen vacancy (O_vac). Then, the formation of H₂ becomes feasible due to migration of H from adsorbed OH* toward Ir₁ and its subsequent reaction with another H*. The interaction of Ir₁ and the second‐neighbouring Fe species demonstrates a new WGS pathway featured by electron transfer at the active site from Fe³⁺?O???Ir²⁺?O_vac to Fe²⁺?O_vac???Ir³⁺?O with the involvement of O_vac. The redox mechanism for WGS reaction through a dual metal active site (DMAS) is different from the conventional associative mechanism with the formation of formate or carboxyl intermediates. The proposed new reaction mechanism is corroborated by the experimental results with Ir₁/FeO_x for sequential production of CO₂ and H₂.     

Probing the interfacial interaction between monolayer molybdenum disulfide and Au nanoclusters

Coupling of plasmonic metal nanostructures on two‐dimensional materials represents one promising approach to improve their optoelectronic device performance. In this article, we systematically investigated the interfacial interactions between Au nanoclusters and monolayer molybdenum disulfide (MoS₂) and the effect of Au decoration on the electrical transport and optical properties of MoS₂, through the combination of in situ MoS₂ field‐effect transistor device evaluation and in situ ultraviolet photoelectron spectroscopy and X‐ray photoelectron spectroscopy measurements. The in situ X‐ray photoelectron spectroscopy/ultraviolet photoelectron spectroscopy experiments revealed a weak interfacial coupling between Au nanoclusters and monolayer MoS₂. The absence of strong charge transfer between Au nanoclusters and MoS₂ was further confirmed by the photoluminescence and Raman measurements. It was also found that the electron charge‐carrier concentration in monolayer MoS₂ weakly depended on the coverage of Au nanoclusters. Copyright © 2017 John Wiley & Sons, Ltd.     

Electrical properties of thick film NTC thermistors based on SrFe0.9Sn0.1O3−δ

The thick film negative temperature coefficient (NTC) thermistors based on SrFe_0.9Sn_0.1O_3–δ were fabricated on alumina substrate by screen-printed technique. The fired thick films were characterized by X-ray diffraction, scanning electron microscopy and complex impedance analysis. The thick film samples showed compact and homogeneous microstructure. Depending on the thick film composition, the values of the resistivity at 25 °C, thermistor constant and activation energy are in the range of 65.5–4860 Ω cm, 2611–3558 K and 0.229–0.312 eV, respectively. Impedance spectroscopy analysis showed both grain and grain boundary resistances decrease with a rise in temperature for the composition SrFe_0.9Sn_0.1O_3–δ with the glass phases of 5 mol% BaBiO₃ and 5 mol% CuO. The conduction mechanism and relaxation behavior were also discussed.     

Colorimetric method for determination of bisphenol A based on aptamer-mediated aggregation of positively charged gold nanoparticles

A sensitive, specific and rapid colorimetric aptasensor for the determination of the plasticizer bisphenol A (BPA) was developed. It is based on the use of gold nanoparticles (AuNPs) that are positively charged due to the modification with cysteamine which is cationic at near-neutral pH values. If aptamers are added to such AuNPs, aggregation occurs due to electrostatic interactions between the negatively-charged aptamers and the positively-charged AuNPs. This results in a color change of the AuNPs from red to blue. If a sample containing BPA is added to the anti-BPA aptamers, the anti-BPA aptamers undergo folding via an induced-fit binding mechanism. This is accompanied by a conformational change, which prevents the aptamer-induced aggregation and color change of AuNPs. The effect was exploited to design a colorimetric assay for BPA. Under optimum conditions, the absorbance ratio of A ₅₂₇/A ₆₈₀ is linearly proportional to the BPA concentration in the range from 35 to 140 ng∙mL⁻¹, with a detection limit of 0.11 ng∙mL⁻¹. The method has been successfully applied to the determination of BPA in spiked tap water and gave recoveries between 91 and 106 %. Data were in full accordance with results obtained from HPLC. This assay is selective, easily performed, and in our perception represents a promising alternative to existing methods for rapid quantification of BPA.

The negatively-charged anti-BPA aptamers can absorb onto the positively-charged cysteamine-capped AuNPs (cysteamine-AuNPs) via electrostatic interactions, which can cause the aggregation of AuNPs accompanied by a red-to-blue color change. In the presence of BPA, the specific binding of BPA to the aptamers induces the conformation changes of anti-BPA aptamers, which can release the aptamers from cysteamine-AuNPs and thus prevent the aggregation and color change of cysteamine-AuNPs.