Aquaporin-11: A channel protein lacking apparent transport function expressed in brain

Background  

The aquaporins are a family of integral membrane proteins composed of two subfamilies: the orthodox aquaporins, which transport only water, and the aquaglyceroporins, which transport glycerol, urea, or other small solutes. Two recently described aquaporins, numbers 11 and 12, appear to be more distantly related to the other mammalian aquaporins and aquaglyceroporins.     

Mechanistic model for the dielectric spectrum of a simple dielectric material

ABSTRACT

In this paper, we perform molecular dynamics simulations of a dielectric fluidic material composed of permanent molecular dipoles. The dielectric spectrum features two peaks at lower frequencies than the system phonon frequency. The primary peak is observed at all temperatures studied and shifts toward lower frequencies as the temperature decreases. During this shift, the secondary peak emerges with a higher peak frequency than the primary peak. The secondary peak amplitude increases as the temperature decreases. Both peaks are dependent on the wavevector; in the small wavevector regime, the primary peak is shifted to higher frequencies as the wavevector squared and the secondary peak amplitude increases as the wavevector increases, but shows no shift in frequency. From the polarisation balance equation, we propose a model for the dielectric spectrum. This captures the spectrum features, and we conjecture that the primary peak is due to dipole moment correlations (Debye-type) and the secondary peak is due to the correlation between the dipole moment and a microscopic local field.     

Size of the light-emitting region in a sonoluminescing bubble

The size of the light-emitting region is a key parameter toward understanding the light-emitting processes in a sonoluminescing bubble. Here we present measurements of interference effects from particles with a diameter of approximately 2 microm situated 6-10 microm from a sonoluminescing bubble. From the angular size of the pattern and from an estimated distance to the particles we conclude that the light-emitting region of a sonoluminescing bubble is smaller than commonly believed [see, e.g., Nature (London) 398, 402 (1999)]. We argue that an upper limit of the size of the light-emitting region is approximately 200 nm.     

Minimal model for Beta relaxation in viscous liquids

Contrasts between beta relaxation in equilibrium viscous liquids and glasses are rationalized in terms of a double-well potential model with structure-dependent asymmetry, assuming structure is described by a single order parameter. The model is tested for tripropylene glycol where it accounts for the hysteresis of the dielectric beta loss peak frequency and magnitude during cooling and reheating through the glass transition.     

Ultra-short pulse laser ablation of copper, silver and tungsten: experimental data and two-temperature model simulations

Experimental results of femtosecond laser ablation of the metals copper, silver and tungsten are compared to simulations based on the two-temperature model. The comparison provides new information about the laser-heating process: For the noble metals (Cu, Ag), the energy transport via ballistic electrons must be included, while this effect is negligible for a transition metal (W). The comparison provides values for the range of ballistic electrons in the noble metals. The model calculation is also employed to investigate the dependence of the threshold fluence and melting depth on pulse duration. It is observed that for pulses shorter than approximately 1 ps the threshold fluence and melting depth are independent of the pulse duration, while they increase as τ ^0.47 and τ ^0.51, respectively, for pulses longer than ∼40 ps, in good agreement with approximate analytical expressions predicting a ?{t}\sqrt{\tau} dependence.     

NVU dynamics. II. Comparing to four other dynamics

In the companion paper [T. S. Ingebrigtsen, S. Toxvaerd, O. J. Heilmann, T. B. Schr?der, and J. C. Dyre, "NVU dynamics. I. Geodesic motion on the constant-potential-energy hypersurface," J. Chem. Phys. (in press)] an algorithm was developed for tracing out a geodesic curve on the constant-potential-energy hypersurface. Here, simulations of NVU dynamics are compared to results for four other dynamics, both deterministic and stochastic. First, NVU dynamics is compared to the standard energy-conserving Newtonian NVE dynamics by simulations of the Kob-Andersen binary Lennard-Jones liquid, its WCA version (i.e., with cut-off's at the pair potential minima), and the Lennard-Jones Gaussian liquid. We find identical results for all quantities probed: radial distribution functions, incoherent intermediate scattering functions, and mean-square displacement as function of time. Arguments are presented for the equivalence of NVU and NVE dynamics in the thermodynamic limit; in particular, to leading order in 1∕N these two dynamics give identical time-autocorrelation functions. In the final part of the paper, NVU dynamics is compared to Monte Carlo dynamics, to a diffusive dynamics of small-step random walks on the constant-potential-energy hypersurface, and to Nose?-Hoover NVT dynamics. If time is scaled for the two stochastic dynamics to make single-particle diffusion constants identical to that of NVE dynamics, the simulations show that all five dynamics are equivalent at low temperatures except at short times.     

Role of the first coordination shell in determining the equilibrium structure and dynamics of simple liquids

The traditional view that the physical properties of a simple liquid are determined primarily by its repulsive forces was recently challenged by Berthier and Tarjus, who showed that in some cases ignoring the attractions leads to large errors in the dynamics [L. Berthier and G. Tarjus, Phys. Rev. Lett. 103, 170601 (2009); J. Chem. Phys. 134, 214503 (2011)]. We present simulations of the standard Lennard-Jones liquid at several condensed-fluid state points, including a fairly low density state and a very high density state, as well as simulations of the Kob-Andersen binary Lennard-Jones mixture. By varying the range of the forces via a shifted-forces cutoff, results for the thermodynamics, dynamics, and structure show that the determining factor for getting the correct statics and dynamics is not whether or not the attractive forces per se are included in the simulations. What matters is whether or not interactions are included from all particles within the first coordination shell - the attractive forces can thus be ignored, but only at extremely high densities. The recognition of the importance of a local shell in condensed fluids goes back to van der Waals; our results confirm this idea and thereby the basic picture of the old hole and cell theories for simple condensed fluids.