Exploring interactions in high-dimensional genomic data: an overview of Logic Regression, with applications

Logic Regression is an adaptive regression methodology mainly developed to explore high-order interactions in genomic data. Logic Regression is intended for situations where most of the covariates in the data to be analyzed are binary. The goal of Logic Regression is to find predictors that are Boolean (logical) combinations of the original predictors. In this article, we give an overview of the methodology and discuss some applications. We also describe the software for Logic Regression, which is available as an R and S-Plus package.     

Cyclic and telechelic ladder polymers derived from tetrahydroxytetramethylspirobisindane and 1,4‐dicyanotetrafluorobenzene

5,5′,6,6′‐Tetrahydroxy‐3,3,3′,3′‐tetramethylspirobisindane was polycondensed with 1,4‐dicyanotetrafluorobenzene in four different solvents at 70 °C. In dimethylformamide, N‐methylpyrrolidone, and sulfolane exclusively, cyclic polymers were detectable by matrix‐assisted laser desorption/ionization time‐of‐flight (MALDI‐TOF) mass spectrometry up to masses around 13,000 Da. In dimethyl sulfoxide, linear byproducts were also found. Higher temperatures caused degradation reactions catalyzed by potassium carbonate. Polycondensations performed with the addition of 4‐tert‐butyl catechol or 2,2′‐dihydroxy binaphthyl yielded linear telechelic oligomers. Equimolar mixtures of linear and cyclic ladder polymers were examined by MALDI‐TOF mass spectra to determine how the end groups and the cyclic structure influenced the signal‐to‐noise ratio. The results suggested a preferential detection of the linear chains. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 5344–5352, 2006     

Correspondences of ribbon categories

Much of algebra and representation theory can be formulated in the general framework of tensor categories. The aim of this paper is to further develop this theory for braided tensor categories. Several results are established that do not have a substantial counterpart for symmetric tensor categories. In particular, we exhibit various equivalences involving categories of modules over algebras in ribbon categories. Finally, we establish a correspondence of ribbon categories that can be applied to, and is in fact motivated by, the coset construction in conformal quantum field theory.     

Image guide couplers with dielectric coupling elements and radiation reduction

Directional couplers in image guide technique for millimeter-wave circuits are discussed, and steps to improve their properties are demonstrated. The simple two-line-9 dB coupler with periodical coupling is compared to a design with an intermediate dielectric coupling element to reduce the frequency dependence. Radiation from the waveguide bends can be reduced significantly by inserting absorber materials at critical points. Experimental results for a-3 dB coupler are also given.     

Competition between van der Waals and hydrogen bonding interactions: structure of the trans-1-naphthol/N(2) cluster

The excitation energy in the multiphoton ionization spectrum of the trans-1-naphthol/N(2) cluster shows only a small red shift with respect to isolated naphthol, indicating a van der Waals pi-bound structure rather than a hydrogen-bonded one. To confirm this interpretation, high-level electronic structure calculations were performed for several pi- and hydrogen-bonded isomers of this cluster. The calculations were carried out at the second order M?ller-Plesset (MP2) level of perturbation theory with the family of correlation consistent basis sets up to quintuple-zeta quality including corrections for the basis set superposition error and extrapolation to the MP2 complete basis set (CBS) limit. We report the optimal geometries, vibrational frequencies, and binding energies (D(e)), also corrected for harmonic zero-point energies (D(0)), for three energetically low-lying isomers. In all calculations the lowest energy structure was found to be an isomer with the N(2) molecule bound to the pi-system of the naphthol ring carrying the OH group. In the CBS limit its dissociation energy was computed to be D(0) = 2.67 kcal/mol (934 cm(-1)) as compared to D(0) = 1.28 kcal/mol (448 cm(-1)) for the H-bound structure. The electronic structure calculations therefore confirm the assignment of the experimental electronic spectrum corresponding to a van der Waals pi-bound structure. The energetic stabilization of the pi-bound isomer with respect to the hydrogen-bonded one is rather unexpected when compared with previous findings in related systems, in particular phenol/N(2).     

Application of the photoionization detector for the determination of ethanol in aqueous solutions and human breath

A determination of ethanol is described, which is based on a purging system in conjunction with a photoionization detector. With that system a fast and reliable determination of ethanol in aqueous solutions is possible. The system has been used for the analysis of wine. The 3delta-detection limit has been 0.005% ethanol, the relative standard deviation 4.8 to 6.0% and the time constant of the entire analytical system 20 s. The photoionization detector has been also applied to the analysis of artificial and genuine human breath. A comparison with gas-chromatography and non-dispersive IR-detection has been proven the reliability of results.