NMR and UV studies of 3'-S-phosphorothiolate modified DNA in a DNA : RNA hybrid dodecamer duplex; implications for antisense drug design

High-resolution NMR spectroscopy has been used to establish the conformational consequences of the introduction of a single 3[prime or minute]-S-phosphorothiolate link in the DNA strand of a DNA : RNA hybrid. These systems are of interest as potential antisense therapeutic agents. Previous studies on similarly modified dinucleotides have shown that the conformation of the sugar to which the sulfur is attached shifts to the north (C(3[prime or minute])-endo/C(2[prime or minute])-exo). Comparisons made between NOESY cross-peak intensities, and coupling constants from PE-COSY spectra, for both non-modified and modified duplexes confirm that this conformational shift is also present in the double helical oligonucleotide system. In addition it is noted that in both the dinucleotides and the modified duplex, the conformation of the sugar ring 3[prime or minute] to the site of modification is also shifted to the north. That this pattern is observed in the small monomeric system as well as the larger double helix is suggestive of some pre-ordering of the sequences. The conclusion is supported by consideration of the (1)H chemical shifts of the heterocyclic bases near the site of the modification. The enhanced stability that these conformational changes should bring was confirmed by UV thermal melting studies. Subsequently a series of singly and doubly 3[prime or minute]-S-phosphorothiolate-modified duplexes were investigated by UV. The results are indicative of an additive effect of the modification with thermodynamic benefit being derived from alternate spacing of two modified linkers.     

Ocimum basilicum L. Methanol Extract Enhances Mitochondrial Efficiency and Decreases Adipokine Levels in Maturing Adipocytes Which Regulate Macrophage Systemic Inflammation

Excessive storage of lipids in visceral or ectopic sites stimulates adipokine production, which attracts macrophages. This process determines the pro- and anti-inflammatory response regulation in adipose tissue during obesity-associated systemic inflammation. The present study aimed to identify the composition of Ocimum basilicum L. (basil) seed extract and to determine its bio-efficacy on adipocyte thermogenesis or fatty acid oxidation and inhibition of lipid accumulation and adipokine secretion. Ocimum basilicum L. seed methanol extract (BSME) was utilized to analyze the cytotoxicity vs. control; lipid accumulation assay (oil red O and Nile red staining), adipogenesis and mitochondrial-thermogenesis-related gene expression vs. vehicle control were analyzed by PCR assay. In addition, vehicle control and BSME-treated adipocytes condition media were collected and treated with lipopolysaccharide (LPS)-induced macrophage to identify the macrophage polarization. The results shown that the active components present in BSME did not produce significant cytotoxicity in preadipocytes or macrophages in the MTT assay. Furthermore, oil red O and Nile red staining assay confirmed that 80 and 160 μg/dL concentrations of BSME effectively arrested lipid accumulation and inhibited adipocyte maturation, when compared with tea polyphenols. Gene expression level of adipocyte hyperplasia (CEBPα, PPARγ) and lipogenesis (LPL)-related genes have been significantly (p ≤ 0.05) downregulated, and mitochondrial-thermogenesis-associated genes (PPARγc1α, UCP-1, prdm16) have been significantly (p ≤ 0.001) upregulated. The BSME-treated, maturing, adipocyte-secreted proteins were detected with a decreased protein level of leptin, TNF-α, IL-6 and STAT-6, which are associated with insulin resistance and macrophage recruitment. The “LPS-stimulated macrophage” treated with “BSME-treated adipocytes condition media”, shown with significant (p ≤ 0.001) decrease in metabolic-inflammation-related proteins—such as PGE-2, MCP-1, TNF-α and NF-κB—were majorly associated with the development of foam cell formation and progression of atherosclerotic lesion. The present findings concluded that the availability of active principles in basil seed effectively inhibit adipocyte hypertrophy, macrophage polarization, and the inflammation associated with insulin resistance and thrombosis development. Ocimum basilicum L. seed may be useful as a dietary supplement to enhance fatty acid oxidation, which aids in overcoming metabolic complications.     

Novel thiocyanate-selective membrane sensors based on di-, tetra-, and hexa-imidepyridine ionophores

Potentiometric thiocyanate-selective sensors based on the use of three synthesized di-, tetra-, and hexa-imidepyridine derivatives as novel anionic neutral ionophores in plasticized poly(vinyl chloride) (PVC) membranes are described. The sensors exhibit significantly enhanced response towards thiocyanate ions over the concentration range 5×10⁻⁶ to 1.0×10⁻² M with a lower detection limit of 0.3 μg ml⁻¹ and slopes ranging from −55.6 to −58.3 mV per decade. Fast and stable response, good reproducibility, long-term stability, applicability over a wide pH range (2-8) and high selectivity for SCN⁻ ion in the presence of 18 common anions are demonstrated. The sensors are used for direct potentiometric measurements of thiocyanate ions over the concentration range 0.2-580 μg ml⁻¹ and for monitoring sequential titration of some metal ions (e.g. Ag⁺, Tl⁺, Cu²⁺, Pb²⁺) in binary and ternary mixtures. Sequential binding of these metal ions with SCN⁻ ensures share stepwise titration curves with consecutive end point breaks at the equivalent points. Recoveries of 98.5-99.1±0.3% are obtained for metal ion concentrations of 0.06-4 mg ml⁻¹.     

Simultaneous removal of copper(II), lead(II), zinc(II) and cadmium(II) from aqueous solutions by multi-walled carbon nanotubes

Multi-walled carbon nanotubes (MWCNTs) were used successfully for the removal of heavy metals from aqueous solution. Characterization techniques showed the carbon as nanotubes with an average diameter between 40 and 60 nm and a specific surface area of 61.5 m² g^?1. The effect of carbon nanotubes mass, contact time, metal ions concentration, solution pH, and ionic strength on the adsorption of Cu(II), Pb(II), Cd(II) and Zn(II) by MWCNTs were studied and optimized. The adsorption of the heavy metals from aqueous solution by MWCNTs was studied kinetically using different kinetic models. A pseudo-second order model and the Elovich model were found to be in good agreement with the experimental data. The mechanism of adsorption was studied by the intra-particle diffusion model, and the results showed that intra-particle diffusion was not the slowest of the rate processes that determined the overall order. This model also revealed that the interaction of the metal ions with the MWCNTs surface might have been the most significant rate process. There was a competition among the metal ions for binding of the active sites present on the MWCNTs surface with affinity in the following order: Cu(II) > Zn(II) > Pb(II) > Cd(II).     

Precipitation sequence during ageing in β1 phase of Cu–Al–Ni shape memory alloy

The shape memory alloys based on the ternary system Cu–Al–Ni are able to produce a memory effect at high temperatures. However, if the material undergoes an accidental overheating, a transformation process leads to progressive loss of its characteristics. In this study, the effect of ageing on the metastable β₁ (austenite) phase of a Cu–13.3 %Al–4 %Ni shape memory alloy was investigated. In addition, the effects of heating rate between 450 and 580 °C on the structural transformations of austenite after cooling to room temperature were studied. Observation by transmission electron microscopy of the structure that has undergone an isothermal ageing shows that the precipitation process depends on the maximum ageing temperature. Furthermore, calorimetric analysis shows that precipitates dissolution is possible when rapid heating between 450 and 580 °C. This behaviour is observed on the cooling diagram which shows a martensitic transformation.     

Evaluation of a tube-based constitutive equation using conventional and planar elongation flow optical rheometers

The predictions of the Marrucci and Ianniruberto model (2003) have been studied in various rheometric flows as well as a planar elongation flow using the ??optical elongational rheometer?? technique proposed by Schuberth and Münstedt (Rheol Acta 47:111?C119, 2008). This combination of techniques extended the range of pertinence of the model to high-extensional rates. Relevance of the identified parameters with respect to tube theory was then discussed.     

New lead (II) selective membrane potentiometric sensors based on chiral 2,6-bis-pyridinecarboximide derivatives

New membrane sensors with cylindrical configuration for lead (II) ions are described based on the use of three newly synthesized pyridine carboximide derivatives as neutral ionophores in plasticized PVC membranes. The sensors exhibit significantly enhanced response towards lead (II) ions over the concentration range 4×10⁻⁶-1×10⁻² mol l⁻¹ at pH 4.5-7 with a lower detection limit of 0.4-3.7 μg ml⁻¹. The sensors display near-Nernstian slope of 26.0-33.1 mV per decade for Pb(II) ions. Effects of plasticizers, lipophilic salts and various foreign common ions are tested. The sensors show long life span, good selectivity for Pb(II) over a wide variety of other metal ions, long term stability, high reproducibility, and fast response. Validation of the method by measuring the lower detection limit, range, accuracy, precision, repeatability and between-day-variability reveals good performance characteristics of the proposed sensors. The sensors are used for direct determination of lead in stack emissions of lead smelters, assay of lead in rocks and monitoring of potentiometric titration of Pb(II) with EDTA. The results obtained agree fairly well with data obtained by atomic absorption spectrometry.     

Synergistic Effect of NiLDH@YZ Hybrid and Mechanochemical Agitation on Glaser Homocoupling Reaction

Herein, we report the synthesis of nickel-layered double hydroxide amalgamated Y-zeolite (NiLDH@YZ) hybrids and the evaluation of the synergistic effect of various NiLDH@YZ catalysts and mechanochemical agitation on Glaser homocoupling reactions. Nitrogen adsorption-desorption experiments were carried out to estimate the surface area and porosity of NiLDH@YZ hybrids. The basicity and acidity of these hybrids were determined by CO₂-TPD and NH₃-TPD experiments respectively and this portrayed good acid-base bifunctional feature of the catalysts. The NiLDH@YZ-catalyzed mechanochemical Glaser coupling reaction achieved best yield of 83 % for the 0.5NiLDH@0.5YZ hybrid after 60 min of agitation, which revealed the highest acid-base bifunctional feature compared to all the investigated catalysts. The developed catalyst has proven itself as a robust and effective candidate that can successfully be employed up to four catalytic cycles without significant loss in catalytic activity, under optimized reaction conditions. This work demonstrated a new strategy for C−C bond formation enabled by the synergy between mechanochemistry and heterogeneous catalysis.     

Effect of Ziziphus and Cordia Gums on Dough Properties and Baking Performance of Cookies

The influence of 2% and 5% Cordia (CG) and Ziziphus (ZG) gums on dough characteristics and cookie quality was investigated. Micro-DoughLab, a texture analyzer (TA), a rapid viscoanalyzer (RVA), and solvent retention capacity were used to examine the effect of CG and ZG gums on dough physicochemical parameters (SRC) and cookie quality. The diameter, thickness, spread, and sensory evaluation of cookies were evaluated. With the addition of CG and ZG, dough softness, mixing time, and mixing tolerance index (MTI) increased, whereas stability and water absorption decreased. TA data showed that adding gums resulted in softer and less sticky doughs than the control, whereas RVA data showed that adding CG resulted in a significant increase in peak viscosity, but no change in flour gel setback. In comparison to the control and CG samples, the ZG samples exhibited the most dough extensibility. The thickness and diameter of the cookies increased but the spread decreased, due to the added gums. The gum-containing cookies had a lower overall acceptability by panelists than the control, although only by a small margin. Gum-containing cookies, on the other hand, can deliver up to 5% soluble fiber.