Functional Binding Surface of a β‐Hairpin VEGF Receptor Targeting Peptide Determined by NMR Spectroscopy in Living Cells

In this study, the functional interaction of HPLW peptide with VEGFR2 (Vascular Endothelial Growth Factor Receptor 2) was determined by using fast ¹⁵N‐edited NMR spectroscopic experiments. To this aim, ¹⁵N uniformly labelled HPLW has been added to Porcine Aortic Endothelial Cells. The acquisition of isotope‐edited NMR spectroscopic experiments, including ¹⁵N relaxation measurements, allowed a precise characterization of the in‐cell HPLW epitope recognized by VEGFR2.     

Symmetric Boundary Value Methods for Second Order Initial and Boundary Value Problems

We introduce symmetric Boundary Value Methods for the solution of second order initial and boundary value problems (in particular Hamiltonian problems). We study the conditioning of the methods and link it to the boundary loci of the roots of the associated characteristic polynomial. Some numerical tests are provided to assess their reliability. Dedicated to the memory of Professor Aldo Cossu     

Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination

X-ray crystallography and NMR spectroscopy provide the only sources of experimental data from which protein structures can be analyzed at high or even atomic resolution. The degree to which these methods complement each other as sources of structural knowledge is a matter of debate; it is often proposed that small proteins yielding high quality, readily analyzed NMR spectra are a subset of those that readily yield strongly diffracting crystals. We have examined the correlation between NMR spectral quality and success in structure determination by X-ray crystallography for 159 prokaryotic and eukaryotic proteins, prescreened to avoid proteins providing polydisperse and/or aggregated samples. This study demonstrates that, across this protein sample set, the quality of a protein's [15N-1H]-heteronuclear correlation (HSQC) spectrum recorded under conditions generally suitable for 3D structure determination by NMR, a key predictor of the ability to determine a structure by NMR, is not correlated with successful crystallization and structure determination by X-ray crystallography. These results, together with similar results of an independent study presented in the accompanying paper (Yee, et al., J. Am. Chem. Soc., accompanying paper), demonstrate that X-ray crystallography and NMR often provide complementary sources of structural data and that both methods are required in order to optimize success for as many targets as possible in large-scale structural proteomics efforts.     

Reaction between quinone and thiazolidine. A study on the formation mechanism of new antiproliferative quinolindiones

Reaction between quinolinquinone and thiazolidine in basic medium was investigated. 2-Arylthiazolidine-4-carboxylic acid ethyl esters undergo two different cleavages in basic medium, yielding the 1-aryl-2-azadiene and a thiolic species. In the presence of quinolinquinone, the isomeric 1-aryl-3-ethoxycarbonyl-pyridoisoquinolin-5,10-diones and 3-amino-3-ethoxycarbonyl-dihydrothienoquinolin-4,9-diones are formed by a hetero-Diels-Alder reaction and 1,4-Michael addition reaction, respectively. A mechanism for the formation of the reaction products is presented.     

UV photoelectron spectra of 5- and 6-azauracil

The He(I) photoelectron spectra of 5-azauracil (1,3,5-triazine-2,4(1H,3H)-dione) and 6-azauracil (1,2,4-triazine-3, 5(2H,4H)-dione) are presented. The spectra are assigned by using INDO/S calculations and comparison arguments with uracil. The first ionization energy in the title compounds is higher than in the usual nucleic acid bases.     

1H-NMR,Ultraviolet and infrared spectra of some (Z)-α-(phenyl)-β-(2-furyl), -(2-pyrrolyl) and -(N-methyl-2-pyrrolyl)acrylonitriles

The ¹H-nmr data of some (Z)-α-(p-substituted-phenyl)-β-(2-furyl), -(2-pyrrolyl), and -(N-methyl-2-pyrrolyl)-acrylonitriles have been investigated to indicate the preferred conformation and to establish the conformational preferences of the β-heterocyclic ring. The ultraviolet spectra have been discussed in order to obtain information about the chromophores responsible for the absorption. The infrared spectra have been analyzed for the identification of the main absorption frequencies of cyano and ethylenic groups and to assign the characteristic absorption bands to specific normal vibrations of the heteroaromatic nuclei.     

Structural and dynamical properties of surfaces from ab-initio molecular dynamics

The recent application to the semiconductor surfaces of the powerful ab-initio molecular dynamics (Car-Parrinello) method [R. Car, M. Parrinello, Phys. Rev. Lett. 55, 2471 (1985)] will be reviewed. The essential features of the method will be addressed first, then we will review a number of recent studies on the properties of the clean and adsorbate covered surfaces of Si, Ge and GaAs, obtained through Car-Parrinello simulations. Finally an original application of the ab-initio molecular dynamics for the clean and hydrogenated GaAs(110) surfaces is presented.     

Effects of temperature on the triplet behavior of the styrylphenanthrene isomers

The properties of the triplet state of five styrylphenanthrene (StPh) trans isomers were studied in 2-methyltetrahydrofuran (MTHF) as a function of temperature. At room temperature the T-T absorption was observed only for 4- and 9-StPh, while under these conditions 1-, 2-, and 3-StPh have too low a quantum yield of triplet formation (Φ_T <0.02); their T-T absorption spectra were obtained at low temperature. Φ_T of 1- and 2-StPh increases more than tenfold on going from 293 to 77 K, and the triplet lifetime (τ_T) increases by four orders of magnitude and approaches values of 5–40 ms at 77 K. The change in τ_T is explained in terms of an equilibrium between trans and perpendicular (perp) conformations of the lowest triplet state in fluid solution and temperature and viscosity effects on the trans → perp rotation. Evidence is presented for the existence of two conformeric trans triplet states of 3-StPh at 77 K. Semi-empirical calculations were performed to obtain the energy of the triplet state, the wavelengths of several T-T absorption maxima (λ_T), and the oscillator strength. The calculated λ_T values coincide with those measured in n-hexane.     

Reaction of N,N'-dialkyldithiodianilines with β-ketoesters. A new synthesis of N-alkyl-2-acyl-3-oxo-3,4-dihydro-1,4-benzothiazines

The title compounds 3a-j together with the N-alkylacylketene S,N-acetals 12a-j were obtained by reaction of N,N'-dialkyldithiodianilines with β-ketoesters compounds. A possible reaction pathway is suggested.