Microphase separation of weakly charged block polyelectrolyte solutions: Donnan theory for dynamic polymer morphologies

A mean-field dynamic density functional theory for the phase behavior of concentrated weakly charged block polyelectrolyte solutions is developed, using the Donnan membrane equilibrium approach to account for electrostatic interactions. In this limit all long-range electrostatic interactions are canceled and the net charge density in any region on a coarse-grained scale is zero. The phase diagram of a model triblock polyelectrolyte in solution as a function of the charge of the solvophilic block and the solvent concentration is established. Different mesoscopic structures (lamellar, bicontinuous, hexagonal, micellar, and dispersed coexisting phases) are formed depending on the copolymer charge asymmetry. It is found that upon changing the charge of the solvophilic copolymer block the polyelectrolyte solution does not follow the lyotropic sequence of phases of this polymer. Upon increase in the charge of the solvophilic blocks, changes in copolymer morphology take place by means of change in curvature of polymeric domains.     

Structure formation in films of weakly charged block polyelectrolyte solutions

A mean-field dynamic density functional theory is used to describe a phase diagram of concentrated solutions of weakly charged flexible block polyelectrolytes in a film. Electrostatics is taken into account by applying the local electroneutrality constraint (the Donnan membrane equilibrium approach). In the Donnan limit it is assumed that a salt added to the solution perfectly screens long-range electrostatic interactions. The phase diagram of a solution of a triblock polyelectrolyte in a film as a function of the solvent concentration and the charge of the polyelectrolyte (solvophilic) block is calculated for a given film thickness. The phase behavior of the block polyelectrolyte film arises from the interplay between surface-induced alignment and the electrostatically-driven structure formation. The observed mesoscopic structures (lamellar, perforated lamellar, cylindrical, micellar, and mixed phases) are oriented parallel to the surfaces for the considered case of morphologies unfrustrated by the film thickness. Structures with connections between parallel layers (bicontinuous, etc.) are not formed. As a result of surface-induced ordering, the region of ordered phases in a film is wider than in bulk and the phase boundary between ordered and disordered phases is more diffuse. As in the case of unconfined block polyelectrolyte solution, the solution in a film does not follow the lyotropic sequence of phases of such a block copolymer upon increase in the charge of the polyelectrolyte block. Upon changing the charge of the solvophilic copolymer block, transformations of copolymer morphology take place via change in curvature of polymeric domains. Due to confinement of a polyelectrolyte film, no swelling of solvophilic domains is observed.     

The Oxidation of Thiols by Flavoprotein Oxidases: a Biocatalytic Route to Reactive Thiocarbonyls

Flavoprotein oxidases are a diverse class of biocatalysts, most of which catalyze the oxidation of C? O, C? N, or C? C bonds. Flavoprotein oxidases that are known to catalyze the oxidation of C? S bonds are rare, being limited to enzymes that catalyze the oxidative cleavage of thioethers. Herein, we report that various flavoprotein oxidases, previously thought to solely act on alcohols, also catalyze the oxidation of thiols to thiocarbonyls. These results highlight the versatility of enzymatic catalysis and provide a potential biocatalytic route to reactive thiocarbonyl compounds, which have a variety of applications in synthetic organic chemistry.     

Genome Mining of Oxidation Modules in trans-Acyltransferase Polyketide Synthases Reveals a Culturable Source for Lobatamides

Bacterial trans-acyltransferase polyketide synthases (trans-AT PKSs) are multimodular megaenzymes that biosynthesize many bioactive natural products. They contain a remarkable range of domains and module types that introduce different substituents into growing polyketide chains. As one such modification, we recently reported Baeyer–Villiger-type oxygen insertion into nascent polyketide backbones, thereby generating malonyl thioester intermediates. In this work, genome mining focusing on architecturally diverse oxidation modules in trans-AT PKSs led us to the culturable plant symbiont Gynuella sunshinyii, which harbors two distinct modules in one orphan PKS. The PKS product was revealed to be lobatamide A, a potent cytotoxin previously only known from a marine tunicate. Biochemical studies show that one module generates glycolyl thioester intermediates, while the other is proposed to be involved in oxime formation. The data suggest varied roles of oxygenation modules in the biosynthesis of polyketide scaffolds and support the importance of trans-AT PKSs in the specialized metabolism of symbiotic bacteria.     

Genome Mining of Oxidation Modules in trans‐Acyltransferase Polyketide Synthases Reveals a Culturable Source for Lobatamides

Bacterial trans‐acyltransferase polyketide synthases (trans‐AT PKSs) are multimodular megaenzymes that biosynthesize many bioactive natural products. They contain a remarkable range of domains and module types that introduce different substituents into growing polyketide chains. As one such modification, we recently reported Baeyer–Villiger‐type oxygen insertion into nascent polyketide backbones, thereby generating malonyl thioester intermediates. In this work, genome mining focusing on architecturally diverse oxidation modules in trans‐AT PKSs led us to the culturable plant symbiont Gynuella sunshinyii, which harbors two distinct modules in one orphan PKS. The PKS product was revealed to be lobatamide A, a potent cytotoxin previously only known from a marine tunicate. Biochemical studies show that one module generates glycolyl thioester intermediates, while the other is proposed to be involved in oxime formation. The data suggest varied roles of oxygenation modules in the biosynthesis of polyketide scaffolds and support the importance of trans‐AT PKSs in the specialized metabolism of symbiotic bacteria.     

Improved configuration space sampling: Langevin dynamics with alternative mobility

We present a new and efficient method for determining optimal configurations of a large number (N) of interacting particles. We use a coarse-grained stochastic Langevin equation in the overdamped limit to describe the dynamics of this system and replace the standard mobility by an effective space dependent inverse Hessian correlation matrix. Due to the analogy of the drift term in the Langevin equation and the update scheme in Newton's method, we expect accelerated dynamics or improved convergence in the convex part of the potential energy surface Phi. The stochastic noise term, however, is not only essential for proper thermodynamic sampling but also allows the system to access transition states in the concave parts of Phi. We employ a Broyden-Fletcher-Goldfarb-Shannon method for updating the local mobility matrix. Quantitative analysis for one and two dimensional systems shows that the new method is indeed more efficient than standard methods with constant effective friction. Due to the construction, our effective mobility adapts high values/low friction in configurations which are less optimal and low values/high friction in configurations that are more optimal.     

Simulations of Electric Field Induced Lamellar Alignment in Block Copolymers in the Presence of Selective Electrodes

Computer simulations have been performed for electric field induced parallel‐perpendicular lamellar phase transition in the presence of electrodes. The simulations are based on the dynamic density functional theory. Here we provide the extension of earlier work in two dimensions (2D) to three dimensions (3D). The result is a vivid picture of the transitions through defect creation and collision.

Observed change in lamellar alignment with applied electric field.     

A Complete Multiscale Modelling Approach for Polymer–Clay Nanocomposites

We present an innovative, multiscale computational approach to probe the behaviour of polymer–clay nanocomposites (PCNs). Our modeling recipe is based on 1) quantum/force‐field‐based atomistic simulation to derive interaction energies among all system components; 2) mapping of these values onto mesoscopic bead–field (MBF) hybrid‐method parameters; 3) mesoscopic simulations to determine system density distributions and morphologies (i.e., intercalated versus exfoliated); and 4) simulations at finite‐element levels to calculate the relative macroscopic properties. The entire computational procedure has been applied to two well‐known PCN systems, namely Nylon 6/Cloisite 20A and Nylon 6/Cloisite 30B, as test materials, and their mechanical properties were predicted in excellent agreement with the available experimental data. Importantly, our methodology is a truly bottom‐up approach, and no “learning from experiment” was needed in any step of the entire procedure.