Biopolymers for biocatalysis: Structure and catalytic mechanism of hydroxynitrile lyases

Hydroxynitrile lyases catalyze the reversible cleavage of α-cyanohydrins to yield hydrocyanic acid and the corresponding aldehyde or ketone. Besides its biological interest, this class of enzymes is also of relevance in industrial biocatalysis for the enantioselective condensation of HCN with a variety of aldehydes and ketones. Several distinctly different types of hydroxynitrile lyases (HNLs) are known, which must have originated through convergent evolution from different ancestral proteins. Three-dimensional structural data are known for three classes of hydroxynitrile lyases. Insights into the reaction mechanisms emerged from a combination of structural, enzyme kinetic, spectroscopic, and molecular modeling data. For all three types of HNLs, mechanisms involving acid–base catalysis were proposed. In members belonging to the α,β-hydrolase type, the amino acid residues of the catalytic triad presumably act as general acid/base, whereas for flavine adenine dinucleotide (FAD)-dependent HNLs a single histidine residue fulfills this function. In the third type of HNL—which is related to carboxypeptidase—acid–base catalysis involves the carboxylate of the C-terminal residue. The catalytic relevance of a positive electrostatic potential in the active site was suggested in some of the mechanistic proposals. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 479–486, 2004     

On the Second Law of Thermodynamics and the Piston Problem

The piston problem is investigated in the case where the length of the cylinder is infinite (on both sides) and the ratio m/M is a very small parameter, where m is the mass of one particle of the gaz and M is the mass of the piston. Introducing initial conditions such that the stochastic motion of the piston remains in the average at the origin (no drift), it is shown that the time evolution of the fluids, analytically derived from Liouville equation in a previous work, agrees with the Second Law of thermodynamics. We thus have a non equilibrium microscopical model whose evolution can be explicitly shown to obey the two laws of thermodynamics.     

Optimale Quantisierung

Zusammenfassung. Optimale Quantisierungen oder – damit ?quivalent – minimale Summen von Momenten spielen in mehreren Zweigen der Mathematik und ihrer Anwendungen eine Rolle. Ausgehend von der Fejes Tóth'schen Ungleichung für Summen von Momenten in der euklidischen Ebene und einem zugeh?rigen Stabilit?tssatz, werden gewisse Erweiterungen auf normierte R?ume und riemannsche Mannigfaltigkeiten h?herer Dimension besprochen. Die Ergebnisse werden dann auf Probleme aus folgenden Bereichen angewendet: (i) Datenübertragung, (ii) Wahrscheinlichkeitstheorie, (iii) numerische Integration, (iv) Approximation konvexer K?rper und (v) isoperimetrische Probleme. Eingegangen am 29. Mai 2002 / Angenommen am 8. Juli 2002     

High-performance liquid chromatography and thin-layer chromatography assays for Devil's Club (Oplopanax horridus)

Devil's root, Oplopanax horridus, is a widely used folk medicine in Alaska and British Columbia. The inner bark of the root and stem has been used to treat colds, cough, fever, and diabetes. The present study involves the development of high-pressure liquid chromatography (HPLC) and thin-layer chromatography (TLC) methods to detect the presence of trans-nerolidol and sterols in the root bark. The HPLC and TLC analytical methods presented are suitable for the characterization and identification of Oplopanax horridus.     

A new approach to phosphoserine and phosphothreonine analysis in peptides and proteins: chemical modification,enrichment via solid-phase reversible binding,and analysis by mass spectrometry

beta-Elimination of the phosphate group on phosphoserine and phosphothreonine residues and addition of an alkyldithiol is a useful tool for analysis of the phosphorylation states of proteins and peptides. We have explored the influence of several conditions on the efficiency of this PO(4)(3-) elimination reaction upon addition of propanedithiol. In addition to the described influence of different bases, the solvent composition was also found to have a major effect on the yield of the reaction. In particular, an increase in the percentage of DMSO enhances the conversion rate, whereas a higher amount of protic polar solvents, such as water or isopropanol, induces the opposite effect. We have also developed a protocol for enrichment of the modified peptides, which is based on solid-phase covalent capture/release with a dithiopyridino-resin. The procedure for beta-elimination and isolation of phosphorylated peptides by solid-phase capture/release was developed with commercially available alpha-casein. Enriched peptide fragments were characterized by MALDI-TOF mass spectrometric analysis before and after alkylation with iodoacetamide, which allowed rapid confirmation of the purposely introduced thiol moiety. Sensitivity studies, carried out in order to determine the detection limit, demonstrated that samples could be detected even in the low picomolar range by mass spectrometry. The developed solid-phase enrichment procedure based on reversible covalent binding of the modified peptides is more effective and significantly simpler than methods based on the interaction between biotin and avidin, which require additional steps such as tagging the modified peptides and work-up of the samples prior to the affinity capture step.     

Fibre optic fluorometric enzyme sensors for hydrogen peroxide and lactate,based on horseradish peroxidase and lactate oxidase

An optical biosensor for the determination of hydrogen peroxide based on immobilized horseradish peroxidase is described. The fluorescence of the dimeric product of the enzyme catalysed oxidation of homovanillic acid is utilized to determine the concentration of H₂O₂. The membrane-bound enzyme is attached to a bifurcated fibre bundle permitting excitation and detection of the fluorescence by a fluorometer. The response of the sensor is linear from 1 to 130 M hydrogen peroxide; the coefficient of variation is 3%. The sensor is stable for more than 10 weeks. The operating pH for maximal sensor response is 8.15. This allows the sensor to be used in combination with oxidase reactions producing hydrogen peroxide, as is demonstrated with a co-immobilized lactate oxidase-horseradish peroxidase optode for the determination of L-lactate. The fluorescence intensity of this sensor depends linearly on the concentration of lactate between 3 and 200 M and a throughput of 10 samples per hour is possible. The precision is in the same range as that of the monoenzyme optode. The lifetime of the bienzyme sensor for lactate is considerably shorter than that of the peroxidase sensor; it is limited by the stability of the immobilized lactate oxidase enzyme. The sensor has been applied to the determination of lactate in control serum.     

One-step electrochemical synthesis of pure poly(2,5-dicyano-p-phenylenevinylene) films

In this communication we describe the electrochemical synthesis of poly(2,5-dicyano-p-phenylenevinylene) (DCNPPV) polymer films on indium tin oxide substrates. We investigate the purity, morphology, absorption and emission properties of the film. The purity was checked by infrared spectroscopy. The film formed presented spectroscopic purity equivalent to the chemically prepared PPV that was dialyzed for one week. Scanning electron microscopy of the surface revealed a grain-like morphology. The absorption and emission spectra showed absorption and emission bands at 420 nm and 575 nm, respectively, with the absorption onset at 422 nm, which corresponds to an energy gap of 2.25 eV. The electrochemical determination of the energy gap gives 2.05 eV, thus quite close to the optical energy gap at the onset of absorption. The EA and IP were determined by electrochemical measurements and are 3.46 eV and 5.51 eV, respectively.

Carbonylrhodium complexes with pyridylphosphines: [Rh(chel)(CO)(PPhxpyl3−x)]

Summary Diphenyl(2-pyridyl)phosphine (PPh₂pyl), phenylbis(2-pyridyl)-phosphine (PPhpyl₂) and tris(2-pyridyl)-phosphine (Ppyl₃) react with [Rh(acac)(CO)₂] (acac=acetylacetonate) and Rh(8-oxy)(CO)₂(8-oxy=8-hydroxyquinolinate) yielding [Rh(chel)(CO)(PPh_xpyl_3–x)]. The properties of these complexes were examined by spectral (i.r.,u.v.-vis,³¹P n.m.r.) and chemical methods.