Theoretical study of ribonucleotide reductase mechanism-based inhibition by 2'-azido-2'-deoxyribonucleoside 5'-diphosphates

2'-azido-2'-deoxyribonucleoside 5'-diphosphates are mechanism-based inhibitors of Ribonucleotide Reductase. Considerable effort has been made to elucidate their mechanism of inhibition, which is still controversial and not fully understood. Previous studies have detected the formation of a radical intermediate when the inhibitors interact with the enzyme, and several authors have proposed possible structures for this radical. We have conducted a theoretical study of the possible reactions involved, which allowed us to identify the structure of the new radical among the several proposals. A new reactional path is also proposed that is the most kinetically favored to yield this radical and ultimately inactivate the enzyme. The energetic involved in this mechanism, both for radical formation and radical decay, as well as the calculated Hyperfine Coupling Constants for the radical intermediate, are in agreement with the correspondent experimental values. This mechanistic alternative is fully coherent with remaining experimental data.     

Fixed-bed drying simulation of agricultural products using a new backward finite difference scheme

This work is concerned with the numerical simulation of fixed-bed corn drying using MSU (Michigan State University) drying model. The classical numerical procedure for MSU model relies on an explicit method of finite differences which requires certain stability conditions between the step sizes of the time and space variables. The objective of the present paper is to establish a stable implicit method based on backward finite differences, in both time and space variables, which takes into account some specific empirical aspects of the problem. Computational results illustrate the efficiency and the flexibility of method.     

New Acetogenins from the Seeds of Annona coriacea

From the hexane and MeOH extracts of Annona coriacea Mart . (Annonaceae) seeds, two novel acetogenins, coriapentocins A and B ( 1 and 2 , resp.) were isolated. The known acetogenin bullacin ( 3 ) was also isolated from the hexane extract. The structures of compounds 1 – 3 were elucidated by NMR and MS analysis, and relative configurations were established by comparison with literature data.     

Self-assembled naphthalenediimide derivative films for light-assisted electrochemical reduction of oxygen

This naphthalene diimide derivative, DC18, forms highly conjugated semiconducting stacked assemblies over electrodes after electrochemical conditioning. These molecular materials are very efficient towards electrochemical photoreduction of oxygen under visible light.     

On Polar Foliations and the Fundamental Group

In this work we investigate the relation between the fundamental group of a complete Riemannian manifold M and the quotient between the Weyl group and reflection group of a polar action on M, as well as the relation between the fundamental group of M and the quotient between the lifted Weyl group and lifted reflection group. As applications we give alternative proofs of two results. The first one, due to the author and T?ben, implies that a polar action does not admit exceptional orbits, if M is simply connected. The second result, due to Lytchak, implies that the orbits are closed and embedded if M is simply connected. All results are proved in the more general case of polar foliations.     

Rare earth centers properties and electron trapping in SnO2 thin films produced by sol–gel route

Some very relevant optical, electrical, and structural properties of SnO₂ doped with rare-earth ions Er³⁺ and Eu³⁺ are presented. Films are produced by the sol–gel-dip coating process, and may be described as a combination of nanoscopic dimension crystallites (about 3–10 nm) with their respective intergrain potential barriers. The Er³⁺ and Eu³⁺ ions are expected to act as acceptors in SnO_2, which is a natural n-type conductor, inducing a high degree of charge compensation. Electron trapping and emission spectra data are presented and are rather distinct, depending on the location of the rare-earth impurity. This behavior allows the identification of two distinct centers: located either in the SnO₂ lattice or segregated at the particles surface. Based on a model for thermally activated cross-section defects, the difference between the capture energy of the photo-excited electron and the intergrain potential barrier is evaluated, leading to distinct values for high and low symmetry sites. A higher distortion in the lattice of undoped SnO₂ and SnO₂:Eu (1 at.%) was evaluated from Rietveld refinements of X-ray diffraction data. This was confirmed by Raman spectra, which are associated with the particles size and disorder. By comparing the samples with the same doping concentration, it was found that this disorder is higher in Eu-doped SnO₂ than in Er-doped SnO₂, which is in agreement with a higher energy for the lattice relaxation in the trapping process by Eu³⁺ centers.     

Mammalian cytosolic glutathione transferases

Glutathione Transferases (GSTs) are crucial enzymes in the cell detoxification process catalyzing the nucleophilic attack of glutathione (GSH) on toxic electrophilic substrates and producing a less dangerous compound. GSTs studies are of great importance since they have been implicated in the development of drug resistance in tumoral cells and are related to human diseases such as Parkinson's, Alzheimer's, atherosclerois, liver cirrhosis, aging and cataract formation. In this review we start by providing an evolutionary perspective of the mammalian cytosolic GSTs known to date. Later on we focus on the more abundant classes alpha, mu and pi and their structure, catalysis, metabolic associated functions, drug resistance relation and inhibition methods. Finally, we introduce the recent insights on the GST class zeta from a metabolic perspective.     

Glutathione transferase: new model for glutathione activation

Glutathione transferases are enzymes of the cellular detoxification system that metabolize a vast spectrum of xenobiotic and endobiotic toxic compounds. They are homodimers or heterodimers and each monomer has an active center composed of a G-site in which glutathione (GSH) binds and an H-site for the electrophilic substrate. When GSH binds to the G-site, the pKa value of its thiol group drops by 2.5 units; this promotes its deprotonation and, therefore, produces a strong nucleophilic thiolate that is able to react with the electrophilic substrate. The mechanism behind the deprotonation of the thiol group is still unknown. Some studies point to the fact that the GSH glutamyl alpha-carboxylate group is essential for GSH activation, whereas others indicate the importance of the active-center water molecules. On the basis of QM/MM calculations, we propose a mechanism of GSH activation in which a water molecule, acting as a bridge, is able to assist in the transfer of the proton from the GSH thiol group to the GSH glutamyl alpha-carboxylate group, after an initial GSH conformational rearrangement. We calculated the potential of mean force of this GSH structural rearrangement that would be necessary for the approach of both groups and we then performed a QM/MM ONIOM scan of water-assisted proton transfer. The overall free-energy barrier for the process is consistent with experimental studies of the enzyme kinetics.