Concavine, an unusual diterpenic alkaloid produced by the fungus Clitocybe concava

A novel alkaloid with an unprecedented ring system consisting of a dodecahydro-7-oxa-9a-aza-benzo[a]azulene ring (1), has been isolated from cultures of Clitocybe concava (Basidiomycetae). Its structure and relative stereochemistry were elucidated on the basis of spectroscopic data. Concavine presents a weak antibacterial activity.     

Metal ion binding to parvalbumin. A proton NMR study

The 1H NMR spectra of carp parvalbumin saturated with Ca2+, Cd2+, La3+ and Lu3+ were compared, using 2D 1H NMR techniques as well as conventional 1H NMR spectra. The Ca2+ and Cd2+ saturated parvalbumin (with both high affinity Ca2+-binding sites occupied) gave rise to very similar spectra. This shows that these two species have almost identical protein conformations. The 1H NMR spectrum from the Ln3+ saturated parvalbumins deviated from the other two and it was therefore concluded that Cd2+ is a better probe for Ca2+ than Ln3+ in parvalbumin and probably also for related calcium binding proteins. The addition of excess of divalent metal ions, such as Mg2+ or Ca2+, causes small changes in the chemical shift of some methyl resonances. This is presumably caused by binding of these metal ions to a third site close to the CD site which is made up of the carboxylic groups from Glu 60 and Asp 61.     

31P NMR studies on the interaction of morpholinyl anthracyclines and related compounds with d(CGTACG)2. Thermodynamic and kinetic parameters

³¹P NMR spectroscopy has been used to study the intercalation of the anthracyclines doxorubicin1, daunorubicin2, 4-demethoxydaunorubicin3, morpholinodoxorubicin4, methoxymorpholinodoxorubicin5 and 9-deoxydaunorubicin6 with the DNA fragment d(CGTACG)₂. The individual phosphate resonances of the oligonucleotide were assigned in the free as well as in the intercalated species. The³¹P chemical shift variations allowed us to identify the intercalation sites, which resulted to be the same for all compoundsi.e. between the terminal CG base-pairs of the helix (two molecules of drugper duplex). The binding constants, the dissociation rate constants and ΔG ^# values have been determined in different conditions of ionic strength and temperature. The kinetic constant (k _off) of the slow step of the anthracycline/duplex intercalation process has been directly measured by NOE exchange techniques. Binding constants depend on the ionic strength and on the self-association process so greatly, that their use to study by NMR anthracycline/DNA interactions is questionable. On the contrary, thek _off are not affected by these phenomena and present an interesting trend for1–6, thus showing that the average lifetime of the drug in the intercalation site appears to be important for determining the cytotoxicity and the antimitotic activity.     

Persistent radicals of trivalent tin and lead

In this report we present synthetic, crystallographic, and new electron paramagnetic resonance (EPR) spectroscopic work that shows that the synthetic route leading to the recently reported, first persistent plumbyl radical *PbEbt3 (Ebt = ethylbis(trimethylsilyl)silyl), that is, the oxidation of the related PbEbt3-anion, was easily extended to the synthesis of other persistent molecular mononuclear radicals of lead and tin. At first, various novel solvates of homoleptic potassium metallates KSnHyp3 (4a), KPbHyp3 (3a), KSnEbt3 (4b), KPbIbt3 (3c), and KSnIbt3 (4c) (Hyp = tris(trimethylsilyl)silyl, Ibt = isopropylbis(trimethylsilyl)silyl), as well as some heteroleptic metallates, such as [Li(OEt2)2][Sn(n)BuHyp2] (3d), [Li(OEt2)2][Pb(n)BuHyp2] (4d), [Li(thf)4][PbPhHyp2] (3e), and [K(thf)7][PbHyp2{N(SiMe3)2}] (3f), were synthesized and crystallographically characterized. Through oxidation by tin(II) and lead(II) bis(trimethylsilyl)amides or the related 2,6-di-tert-butylphenoxides, they had been oxidized to yield in most cases the corresponding radicals. Five novel persistent homoleptically substituted radicals, that is, *SnHyp3 (2a), *PbHyp3 (1a), *SnEbt3 (2b), *SnIbt3 (2c), and *PbIbt3 (1c), had been characterized by EPR spectroscopy. The stannyl radicals 2a and 2c as well as the plumbyl radical 1c were isolated as intensely colored crystalline compounds and had been characterized by X-ray diffraction. Persistent heteroleptically substituted radicals such as *PbHyp2Ph (1e) or *PbHyp2Et (1g) had also been generated, and some selected EPR data are given for comparison. The plumbyl radicals *PbR3 exhibit a clean monomolecular decay leading to the release of a temperature-dependent stationary concentration of branched silyl radicals. They may thus serve as tunable sources of these reactive species that may be utilized as reagents for mild radical silylations and/or as initiators for radical polymerizations. We present EPR-spectroscopic investigations for the new tin- and lead-containing compounds giving detailed insights into their electronic and geometric structure in solution, as well as structural studies on the crystalline state of the radicals, some of their anionic precursors, and some side-products.     

PAMAM Dendrimers for siRNA Delivery: Computational and Experimental Insights

Short double‐stranded RNAs, which are known as short interfering RNA (siRNA), can be used to specifically down‐regulate the expression of the targeted gene in a process known as RNA interference (RNAi). However, the success of gene silencing applications based on the use of synthetic siRNA critically depends on efficient intracellular delivery. Polycationic branched macromolecules such as poly(amidoamine) (PAMAM) dendrimers show a strong binding affinity for RNA molecules and, hence, can provide an effective, reproducible, and relatively nontoxic method for transferring siRNAs into animal cells. Notwithstanding these perspectives, relatively few attempts have been made so far along these lines to study in detail the molecular mechanisms underlying the complexation process between PAMAMs and siRNAs. In this work we combine molecular simulation and experimental approaches to study the molecular requirements of the interaction of RNA‐based therapeutics and PAMAM dendrimers of different generations. The dendrimers and their siRNA complexes were structurally characterized, and the free energy of binding between each dendrimer and a model siRNA was quantified by using the well‐known MM/PBSA approach. DOSY NMR experiments confirmed the structural in silico prediction and yielded further information on both the complex structure and stoichiometry at low N/P ratio values. siRNA/PAMAM complex formation was monitored at different N/P ratios using gel retardation assays, and a simple model was proposed, which related the amount of siRNA complexed to the entropy variation upon complex formation obtained from the computer simulations.