A simplified monobuffer multidimensional chromatography for high-throughput proteome fractionation

The complexity of the human serum proteome is attributed to both a large dynamic range of protein abundance, as much as 10 orders of magnitude, and a disproportionate few dozens of proteins representing as much as 99% of the total protein content. These characteristics make it beneficial to use a pre-fractionation step prior to any high-resolution analysis, such as mass spectrometry. The present method describes a unimodal multidimensional chromatography concept to rapidly achieve an effective fractionation of human serum that is directly amenable with surface-enhanced laser desorption/ionization (SELDI)-based mass spectrometry. This method is based on the use of a column composed of a superimposed sequence of sorbents. The assembly is first equilibrated with a single binding buffer and then loaded with the whole crude sample. As the sample crosses the different adsorbent layers proteins within are sequentially trapped according to the complementary properties vis-a-vis of the sorbent. Once the loading and capturing is achieved, the sequence of columns is disassembled and each column, containing different complement of proteins is eluted separately in a single step and under optimal elution conditions. When compared to classical single-chemistry fractionation based on, for example, anion-exchange and pH stepwise elution, the new proposed approach shows much lower protein overlap between fractions, and therefore, greater resolution. This results in a larger number of detectable species, and therefore, reinforces the power of discovery of new biomarkers. A significantly higher sensitivity for low-abundance species was additionally found as evidenced by spiking trials.     

Thermal monitoring of morphology in triblock terpolymers with crystallizable blocks

The bulk morphology of poly(1,4‐butadiene)–block–polystyrene–block–poly (ethylene oxide) (PB‐b‐PS‐b‐PEO) and polyethylene–block–polystyrene–block–poly (ethylene oxide) (PE‐b‐PS‐b‐PEO) triblock terpolymers is analyzed under a thermal protocol. This allows the investigation of the morphology during the occurrence of thermal transitions, such as crystallization and melting, which is a neat way of studying the competition between microphase separation and crystallization for the morphology formation. Only one of the studied systems presented a morphological transition upon melting of the PEO and the PE blocks, attributed to the crystallization of the PE block in finite interconnected domains. All the other systems presented no morphological transitions during the thermal scan. The results prove that the crystallization only disrupt the microphases generated in the molten state under very specific circumstances for these block copolymers. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 3197–3206, 2007     

The quest for affinity chromatography ligands: are the molecular libraries the right source?

Affinity chromatography separations of proteins call for highly specific ligands. Antibodies are the most obvious approach; however, except for specific situations, technical and economic reasons are arguments against this choice especially for preparative purposes. With this in mind, the rationale is to select the most appropriate ligands from collections of pre‐established molecules. To reach the objective of having a large structural coverage, combinatorial libraries have been proposed. These are classified according to their nature and origin. This review presents and discusses the most common affinity ligand libraries along with the most appropriate screening methods for the identification of the right affinity chromatography selective structure according to the type of library; a side‐by‐side comparison is also presented.     

Thermal effects in collision-free infrared multiphoton absorption by SF6 and CF3Br

An opto-thermal molecular beam study has been carried out to investigate the multiple-photon laser excitation of SF₆ and CF₃Br. The molecular beam was produced by means of a supersonic expansion through a nozzle at variable temperature. The opto-thermal signal was measured by means of a high-sensitivity superconducting bolometer. The multiple-photon excitation of SF₆ has been measured as a function of the initial ro-vibrational population of the molecule. The experimental results have been compared with both previously published data of molecular beam and gas cell experiments and theoretical calculations. A satisfactory agreement has been found between some of our experimental results and the theoretical spectra obtained by means of the heat-bath feed-back model.     

Continuous-flow delta18O measurements: new approach to standardization, high-temperature thermodynamic and sulfate analysis

The continuous-flow method for the determination of the O-isotope composition of solid samples has significant advantages over off-line extraction methods, but the problem has arisen of the standardization of results that has only partially been resolved by the use of water standards. We propose a new approach to standardization that uses carbothermic reduction of calcium carbonate standards catalyzed by high-purity AgCl. Analytical accuracy, precision, variance homogeneity and long-term stability are proven. Preliminary data on the barium sulfate delta18O analyses are reported, with a closer look at the different results obtained by off-line and on-line methods on intercomparison standards NBS-127 and MSS3.     

Simple Determination of 1-Deoxynojirimycin in a New Dietary Supplement by Liquid Chromatography

A simple and fast chromatographic method using ultraviolet diode-array detector (UV-DAD) was developed for the high performance liquid chromatography determination of the content of 1-deoxynojirimycin (DNJ) in a new dietary supplement in the form of granules for oral solution preparation. The derivatization reaction was carried out at room temperature for 15 min at pH 7. The reaction reached completeness at a reagent to analyte molar ratio of about 60. The chromatographic separations were performed on a C18 Phenomenex Synergi Fusion stainless steel column (250 mm?×?4.6 mm; 4 µm) with detection at λ?=?254 nm. The mobile phase consisted of triethylammonium (TEA) phosphate buffer (0.05 M; pH 3) and acetonitrile under gradient conditions at a flow-rate ramping from 1 to 1.2 mL/min. The validation parameters (linearity, sensitivity, accuracy, precision, specificity and stability) were satisfactory. Intra-day precision (relative standard deviation, RSD) was ≤?2.23% for peak area and retention time without significant differences between intra- and inter-day data. Recovery studies gave good results (93.59%; n?=?15) with a RSD of 2.64%. The developed method is suitable for the quality control of DNJ in raw material and industrial products. The method can be applied in any analytical laboratory and does not require sophisticated instrumentation.     

Models and people: An alternative view of the emergent properties of computational models

Computer models can help humans gain insight into the functioning of complex systems. Used for training, they can also help gain insight into the cognitive processes humans use to understand these systems. By influencing humans understanding (and consequent actions) computer models can thus generate an impact on both these actors and the very systems they are designed to simulate. When these systems also include humans, a number of self‐referential relations thus emerge which can lead to very complex dynamics. This is particularly true when we explicitly acknowledge and model the existence of multiple conflicting representations of reality among different individuals. Given the increasing availability of computational devices, the use of computer models to support individual and shared decision making could potentially have implications far wider than the ones often discussed within the Information and Communication Technologies community in terms of computational power and network communication. We discuss some theoretical implications and describe some initial numerical simulations. © 2015 Wiley Periodicals, Inc. Complexity 21: 202–213, 2016     

Contribution of solid-phase hexapeptide ligand libraries to the repertoire of human bile proteins

Proteins in bile may have important physiological functions and serve as disease biomarkers. Here, the protein composition of human gallbladder bile was analyzed using a recently described chromatography-like technology capable to enhance the signal of low-abundance species. First, proteins present in bile fluid were treated with immobilized peptide ligand libraries to concentrate dilute and very dilute species while concomitantly diluting the high-abundance proteins. The analysis of resulting protein mixture was then performed using LC-MS/MS after having classically separated proteins by a mini preparative gel electrophoresis. Overall 222 gene products were found; 143 of them were not reported before in proteomics studies. Ligand libraries by themselves contributed to find 81 new gene products distributed throughout different categories. The described chromatographic approach provides a significant contribution to the bile protein repertoire and opens new perspectives for the discovery of markers for specific biliary tract diseases.     

Romancing the "hidden proteome", Anno Domini two zero zero seven

The mechanism of action and properties of a solid-phase ligand library made of hexapeptides, for capturing the "hidden proteome", i.e. the low- and very low-abundance proteins constituting the vast majority of species in any proteome, be it a cell or tissue lysate or a biological fluid, are here reviewed. Mechanisms of adsorption are evaluated, as well as different protocols for en bloc or sequential elution of the captured polypeptides. Examples are given of capture of proteins from serum, human platelet extracts, bacterial extract and egg white. The increment in detection of low-abundance species appears to be of at least four-fold as compared with untreated samples. One particular aspect of this capture is the adsorption of a high proportion of small peptides (in the Mr 600-8000 Da range) that are normally lost upon electrophoretic two-dimensional mapping. Such a peptide population, in human sera, may be of particular importance since it may contain protein cleavage products of diagnostic value.     

On-line dimensional measurement of small components on the eyeglasses assembly line

Dimensional measurement of the subassemblies at the beginning of the assembly line is a very crucial process for the eyeglasses industry, since even small manufacturing errors of the components can lead to very visible defects on the final product. For this reason, all subcomponents of the eyeglass are verified before beginning the assembly process either with a 100% inspection or on a statistical basis. Inspection is usually performed by human operators, with high costs and a degree of repeatability which is not always satisfactory.This paper presents a novel on-line measuring system for dimensional verification of small metallic subassemblies for the eyeglasses industry. The machine vision system proposed, which was designed to be used at the beginning of the assembly line, could also be employed in the Statistical Process Control (SPC) by the manufacturer of the subassemblies.The automated system proposed is based on artificial vision, and exploits two CCD cameras and an anthropomorphic robot to inspect and manipulate the subcomponents of the eyeglass. Each component is recognized by the first camera in a quite large workspace, picked up by the robot and placed in the small vision field of the second camera which performs the measurement process. Finally, the part is palletized by the robot. The system can be easily taught by the operator by simply placing the template object in the vision field of the measurement camera (for dimensional data acquisition) and hence by instructing the robot via the Teaching Control Pendant within the vision field of the first camera (for pick-up transformation acquisition).The major problem we dealt with is that the shape and dimensions of the subassemblies can vary in a quite wide range, but different positioning of the same component can look very similar one to another. For this reason, a specific shape recognition procedure was developed. In the paper, the whole system is presented together with first experimental lab results.