Mapping of possible prion protein self-interaction domains using peptide arrays

Background  

The common event in transmissible spongiform encephalopathies (TSEs) or prion diseases is the conversion of host-encoded protease sensitive cellular prion protein (PrP^C) into strain dependent isoforms of scrapie associated protease resistant isoform (PrP^Sc) of prion protein (PrP). These processes are determined by similarities as well as strain dependent variations in the PrP structure. Selective self-interaction between PrP molecules is the most probable basis for initiation of these processes, potentially influenced by chaperone molecules, however the mechanisms behind these processes are far from understood. We previously determined that polymorphisms do not affect initial PrP^C to PrP^Sc binding but rather modulate a subsequent step in the conversion process. Determining possible sites of self-interaction could elucidate which amino acid(s) or amino acid sequences contribute to binding and further conversion into other isoforms. To this end, ovine – and bovine PrP peptide-arrays consisting of 15-mer overlapping peptides were probed with recombinant sheep PrP^C fused to maltose binding protein (MBP-PrP).     

Extraction and separation of Th(IV) and U(VI) from nitric acid media using PIA-8 and HDEHP

Extraction behavior of Th(IV) and U(VI) has been investigated with bis(2-ethylhexyl) phosphinic acid (PIA-8) and bis(2-ethylhexyl) phosphoric acid (HDEHP) from nitric acid media in toluene. The optimum conditions for extraction of these metals have been established by studying various parameters like acid concentration, pH, reagent concentration, diluents and shaking time. The extraction of Th(IV) was found to be quantitative with 0.3-2.5M HNO₃ by 2.5^.10^-2M HDEHP and in the pH range 0.1-2.5 with 2.3^.10^-2M PIA-8 in toluene. U(VI) was completely extracted in the acidic range of 0.1-2.0M HNO₃ with 2.2^.10^-2M HDEHP and in the pH range of 1.0-3.0 with 2.0^.10^-2M PIA-8 in toluene. The probable extracted species have been ascertained by log D-log c plot as UO₂ R₂ ^.2HR with both the reagents and Th (NO₃)₂R₂ ^.2HR with PIA-8 and Th (NO₃)₃R^.3HR with HDEHP, respectively. Temperature dependence of the extraction equilibrium is examined by the temperature variation method. Separation of U(VI) and Th(IV) was also carried out from commonly associated metals.     

Extraction of U(VI), Zr(IV) and Th(IV) from perchlorate media, by PC-88A

Extraction of U(VI), Zr(IV) and Th(IV) has been investigated from perchlorate media using 2-ethylhexyl phosphonic acid mono-2-ethylhexyl ester (PC-88A) dissolved in toluene. The extraction of U(VI), Zr(IV) and Th(IV) was found to be quantitative in the pH range 1.6 to 3.2, 2.0 to 4.7 and 2.3 to 3.8, respectively, with 3.0^.10^-3, 5.6^.10^-4 and 1.0^.10^-2M PC-88A dissolved in toluene. U(VI) was stripped with 4.0M HCl, Zr(IV) with 2.5M NaF and Th(IV) with 8.0M HCl from the metal loaded organic phase containing PC-88A dissolved in toluene. The probable extracted species have been ascertained by plotting log D vs. log [HR] as UO₂R₂ ^.2HR, ZrR₄ ^.2HR and ThR₄ ^.4HR, respectively. U(VI) was separated from Zr(IV) and Th(IV) and from other associated metals. This method was proved by the determination of U(VI) in some real samples.     

Solvent Extraction Separation of Th(IV) and U(VI) with PC-88A

Liquid-liquid extraction of Th(IV) and U(VI) has been investigated by commercial extractant PC-88A in toluene. The optimum conditions for extraction of these metals have been established by studying the various parameters like acid concentration/pH, reagent concentration, diluents and shaking time. The extraction of Th(IV) was found to be quantitative with 0.1–1.0M HNO₃ acid and in the pH range 1.0–4.0 while U(VI) was completely extracted in the pH range 1.0–3.5 with 2.5·10^–2M and 2.·10^–2M PC-88A in toluene, respectively. The probable extracted species have been ascertained by log D-log C plot as ThR₄·4HR and UO₂R₂·2HR, respectively. The method permits separation of Th(IV) and U(VI) from associated metals with a recovery of 99.0%.     

Studies on photoinduced effects in pulse-electrodeposited Ag/Hg-1212/CdSe hetero-nanostructures

Metal/superconductor/semiconductor (Ag/Hg-1212/CdSe) hetero-nanostructures have been fabricated using pulse-electrodeposition technique and are characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy (SEM) studies. The junction capacitance of Ag/Hg-1212, Hg-1212/CdSe and Ag/Hg-1212/CdSe heterojunctions is measured in dark and under laser irradiation at room temperature. The nature of the junction formed and built-in-junction potentials were determined. The increase in carrier concentration across the junction due to photo-irradiation has been observed.     

Effect of laser irradiation of C-V characteristics of electrodeposited Ag/Tl-2223/CdSe hetero-nanostructures

One of the innovative technological directions for the high-temperature superconductors has been persued by fabricating the heteroepitaxial multilayer structures such as superconductor-semiconductor heterostructures. In the present investigation, metal/superconductor/semiconductor (Ag/Tl-2223/CdSe) hetero-nanostructures have successfully been fabricated using dc electrodeposition technique and were characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy (SEM) studies. The measurement of junction capacitance as a function of biasing voltage was used for the estimation of junction built-in-potential (V _D) and to study the charge distribution in a heterojunction. The Mott-Schottky plots were measured for each junction in dark and under the photo-irradiation. The effect of laser irradiation on C-V characteristics of hetero-nanostructure has been studied.     

Glycopeptide and Oligosaccharide Libraries

Despite the burgeoning interest in the various biological functions and consequent therapeutic potential of the vast number of oligosaccharides found in nature on glycoproteins and cell surfaces, the development of combinatorial carbohydrate chemistry has not progressed as rapidly as expected. The reason for this imbalance is rooted in the difficulty of oligosaccharide assembly and analysis that renders synthesis a rather cumbersome endeavor. Parallel approaches that generate series of analogous compounds rather than real libraries have therefore typically been used. Since generally low affinity is obtained for interactions between carbohydrate receptors and modified oligosaccharides designed as mimetics of natural carbohydrate ligands, glycopeptides have been explored as alternative mimics. Glycopeptides have been proven in many cases to be superior ligands with higher affinity for a receptor than the natural carbohydrate ligand. High-affinity glycopeptide ligands have been found for several types of receptors including the E-, P-, and L-selectins, toxins, glycohydrolases, bacterial adhesins, and the mannose-6-phosphate receptor. Furthermore, the assembly of glycopeptides is considerably more facile than that of oligosaccharides and the process can be adapted to combinatorial synthesis with either glycosylated amino acid building blocks or by direct glycosylation of peptide templates. The application of the split and combine approach using ladder synthesis has allowed the generation of very large numbers of compounds which could be analyzed and screened for binding of receptors on solid phase. This powerful technique can be used generally for the identification and analysis of the complex interaction between the carbohydrates and their receptors.     

Enzymatic Oxygen Microsensor Based on Bilirubin Oxidase Applied to Microbial Fuel Cells Analysis

A selective oxygen biosensor based on bilirubin oxidase (BOx) was developed. The sensor was used for determining oxygen profiles in a membraneless, single‐chamber microbial fuel cell (SCMFC), fed with raw wastewater. The linear response of the sensor was optimized by a diffusion layer of silica gel. A computer‐controlled stage was used to obtain accurate and precise measurements. Oxygen concentration in biofilms covering electrodes was measured, showing 3 mg L^?1 of O₂ in the bulk solution, decreasing to 0 mg L^?1 in the cathodic biofilm. The MFC generated power in the range of 0–0.08 mW, associated to the oxygen content.     

Liquid-liquid extraction separation of iron (III) with 2-ethyl hexyl phosphonic acid mono 2-ethyl hexyl ester

Liquid-liquid extraction separation of iron(III) with 2-ethyl hexyl phosphonic acid mono 2-ethyl hexyl ester (PC-88A) in toluene has been studied. Quantitative extraction of iron(III) with 5 x 10(-3) M PC-88A in toluene is observed in the pH range 0.75-2.5. From the extracted complex species in the organic phase iron(III) was stripped with 1-4 M HNO(3), 1.5-4 M H(2)SO(4) and 1.5-4 M HCl, and later determined spectrophotometrically by thiocyanate method. Separation of iron(III) was carried out with some of the first transition metals in binary and multicomponent mixtures. This method was extended for the determination of iron in real samples.