Non-Direct Sequence Ions in the Tandem Mass Spectrometry of Protonated Peptide Amides—an Energy-Resolved Study

The fragmentation reactions of the MH⁺ ions of Leu-enkephalin amide and a variety of heptapeptide amides have been studied in detail as a function of collision energy using a QqToF beam type mass spectrometer. The initial fragmentation of the protonated amides involves primarily formation of b_n ions, including significant loss of NH₃ from the MH⁺ ions. Further fragmentation of these b_n ions occurs following macrocyclization/ring opening leading in many cases to b_n ions with permuted sequences and, thus, to formation of non-direct sequence ions. The importance of these non-direct sequence ions increases markedly with increasing collision energy, making peptide sequence determination difficult, if not impossible, at higher collision energies.

Improving weighted information criterion by using optimization

Although artificial neural networks (ANN) have been widely used in forecasting time series, the determination of the best model is still a problem that has been studied a lot. Various approaches available in the literature have been proposed in order to select the best model for forecasting in ANN in recent years. One of these approaches is to use a model selection strategy based on the weighted information criterion (WIC). WIC is calculated by summing weighted different selection criteria which measure the forecasting accuracy of an ANN model in different ways. In the calculation of WIC, the weights of different selection criteria are determined heuristically. In this study, these weights are calculated by using optimization in order to obtain a more consistent criterion. Four real time series are analyzed in order to show the efficiency of the improved WIC. When the weights are determined based on the optimization, it is obviously seen that the improved WIC produces better results.     

Comparative Evaluation of Pumice Stone as an Alternative Immobilization Material for 1,3-Propanediol Production from Waste Glycerol by Immobilized Klebsiella pneumoniae

In this study, pumice stone (PS), which is a vastly available material in Turkey, was evaluated as an alternative immobilization material in comparison to other commercially available immobilization materials such as glass beads and polyurethane foam. All immobilized bioreactors resulted in much better 1,3-propanediol production from waste glycerol in comparison to the suspended cell culture bioreactor. It was also demonstrated that the locally available PS material is as good as the commercially available immobilization material. The maximum volumetric productivity (8.5?g?L^?1?h^?1) was obtained by the PS material, which is 220?% higher than the suspended cell system. Furthermore, the immobilized bioreactor system was much more robust against cell washout even at very low hydraulic retention time values.     

The consequences of yield stress on deployment of a non-Newtonian anti-HIV microbicide gel

A recent study in South Africa has confirmed, for the first time, that a vaginal gel formulation of the antiretroviral drug Tenofovir, when applied topically, significantly inhibits sexual HIV transmission to women [10]. However the gel for this drug, and anti-HIV microbicide gels in general, have not been designed using full understanding of how gel spreading and retention in the vagina govern successful drug delivery. Elastohydrodynamic lubrication theory can be applied to model such spreading of microbicide gels, which are inherently non-Newtonian [13], [15]. A yield stress is emerging as one of the important properties of microbicide gel vehicle deployment, as this may improve retention within the vaginal canal. On the other hand, a yield stress may decrease the initial extent of the coating flow. Here, we first explain a certain yield stress paradox observed generally in many lubrication flows. Four conditions are determined, via scaling analysis, which mitigate the inconsistency in the use of lubrication theory to analyze the specific problem of elastic wall squeezing flow of yield stress fluid. Parameters characterizing these conditions are obtained experimentally for a test gel. Using them, it is shown that the lubrication approximation may be applied to the elastic wall-squeezing problem for this gel.     

Forecasting nonlinear time series with a hybrid methodology

In recent years, artificial neural networks (ANNs) have been used for forecasting in time series in the literature. Although it is possible to model both linear and nonlinear structures in time series by using ANNs, they are not able to handle both structures equally well. Therefore, the hybrid methodology combining ARIMA and ANN models have been used in the literature. In this study, a new hybrid approach combining Elman’s Recurrent Neural Networks (ERNN) and ARIMA models is proposed. The proposed hybrid approach is applied to Canadian Lynx data and it is found that the proposed approach has the best forecasting accuracy.     

Production of fungicidal oil and activated carbon from pistachio shell

The main objective of this study was to evaluate the feasibility of pistachio shell as a biomass feedstock for the production of fungicidal oil and a precursor for the production of activated carbon by physical activation. For this purpose, pistachio shell was pyrolyzed in a fixed bed reactor at the different temperatures (300-600 °C). The pyrolysis products were identified as gas, bio-oil, aqueous solution and char. The product distribution from pyrolysis process did not significantly change when the pyrolysis temperature was above 300 °C. The pyrolysis gas product had low calorific value since it contained the high proportion of carbon oxides. Because of their high oxygen content, the bio-oils were found not to be used as a fuel. Thus, the bio-oil was tested again four different types of fungi (pathogenetic, wood decaying and saprophyting). It was shown fungicidal activity again all tested fungi at the concentration of 10-50 mg ml⁻¹. The pyrolysis char was evaluated as a precursor for the production of activated carbon. The surface area and micropore volume of the activated carbon produced from the char by CO₂ activation at 900 °C were found to be 708 m² g⁻¹ and 0.280 cm³ g⁻¹, respectively.     

Synthesis,characterization and photoluminescence studies of new Cu(II) complex

In the current work, a new coordination complex, [Cu(HL)₂], 1 [H₂L = 2–((E)–(2–hydroxypropylimino)methyl)–4–nitrophenol] was successfully synthesized and characterized by IR, UV-vis and photoluminescence spectroscopic techniques, single crystal and powder X-ray diffraction measurements. In the crystalline structure of complex 1, the aliphatic –OH group of the ligand is not coordinated and points away from the metal coordination zone, and also actively participates in intermolecular bifurcated O?H···O hydrogen bonds which link the molecules to form hydrogen-bonded linear chains. C?H···π and π···π contacts also connect the molecules in the structure which form to 3D structure. This hydrogen bonded polymeric networks lie in the bc-plane and stacks along to the a-axis. Furthermore, complex 1 and its ligand H₂L display an intense navy-blue emission and blue emission in the solid state at room temperature, respectively, when they are excited under UV light.     

Magnetic properties and sensitized visible and NIR luminescence of DyIII and EuIII coordination polymers by energy transfer antenna ligands

Two coordination polymers, {[Ln(2-stp)(4,4′-bipy)(H₂O)].(H₂O)}, [Ln = Dy (1) and Eu (2), 2-stp = 2-sulfoterephthalate and 4,4′-bipy = 4,4′-bipyridine] have been characterized by solid state UV-vis, FTIR spectra, X-ray single crystal diffraction and solid state photoluminescence. Variable-temperature magnetic susceptibility and isothermal magnetization as function of external magnetic field is also studied for both complexes. After ligand-mediated excitation, both complexes show the characteristic visible and NIR luminescence of the corresponding Ln^III ions (Ln = Dy, Eu) which is due to efficient energy transfer from the ligands to the central Ln^III ions via an antenna effect. The indirect energy transfer in both complexes has been investigated and discussed in detail.