Crystallization of Arthrobacter sp. strain 1C N-(1-D-carboxyethyl)-L-norvaline dehydrogenase and its complex with NAD+

The novel NAD+-linked opine dehydrogenase from a soil isolate Arthrobacter sp. strain 1C belongs to an enzyme superfamily whose members exhibit quite diverse substrate specificites. Crystals of this opine dehydrogenase, obtained in the presence or absence of co-factor and substrates, have been shown to diffract to beyond 1.8 ? resolution. X-ray precession photographs have established that the crystals belong to space group P21212, with cell parameters a = 104.9, b = 80.0, c = 45.5 ? and a single subunit in the asymmetric unit. The elucidation of the three-dimensional structure of this enzyme will provide a structural framework for this novel class of dehydrogenases to enable a comparison to be made with other enzyme families and also as the basis for mutagenesis experiments directed towards the production of natural and synthetic opine-type compounds containing two chiral centres.     

Structure of zone-cast HBC-C12H25 films

The structure of a thin zone-cast film of the hexa-n-dodecyl-substituted hexa-peri-benzocoronene (HBC) has been investigated using grazing incidence X-ray diffraction. A model with an orthorhombic unit cell containing two molecules accounts well for the observations. The molecules are arranged in a "herringbone" structure resembling the packing observed for unsubstituted HBC. The molecular disk planes are oriented perpendicularly to the substrate, rotated by approximately 39 degrees about the film normal. The relatively long side chains of dodecyl were found to be in an ordered interdigitated state. The aliphatic side chains and the aromatic HBC-cores segregate to form regular vertical domains spanning the film thickness. For in-plane rocking scans a discrete orientation distribution is observed with peaks at regular angle intervals. We interpret this as a grain boundary effect induced by alkyl chain stacking faults.     

Computable error bounds for pointwise derivatives of a Neumann problem

In this paper we discuss the recovery of derivatives and thecomputation of rigorous and useful upper bounds for the pointwiseerror in the recovered derivatives, for finite element approximationsof the Laplace equation with Neumann boundary conditions, especiallyat points close to or on a smooth, curved boundary. We analyzethe dipole image technique for the case of curved boundaries,and show how to compute reliable recovered derivatives and errorbounds even in the limiting case of points lying on the curvedboundary. Numerical experiments show reasonably tight errorbounds for points both close to and away from a curved boundary.     

Smectic structures in electrochemically prepared poly(3,4‐ethylenedioxythiophene) films

Sub‐micrometer layers of electrochemically prepared methyl‐ and decyl‐substituted poly(3,4‐ethylenedioxythiophene) (PEDOT) carrying perchlorate counterions have been examined with grazing incidence X‐ray diffraction with synchrotron radiation. The materials were found to be partially crystalline, and the data could be ascribed to a model of sheets of π‐π stacked polymer chains with a smectic ordering of these sheets. An unsubstituted PEDOT sample with the polymeric polystyrenesulfonic acid as a counterion was also investigated and turned out to be essentially amorphous. © 2003 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 41: 945–952, 2003     

Electron spin resonance studies of anisotropy in semiconducting polymeric films

X‐band electron spin resonance was employed to study the structural anisotropy in several polythiophene derivatives. Because of the dominating homogeneous width, the obtained absorption spectra were Lorentzian‐shaped. Information about the structural anisotropy was obtained from the position and width of the absorption peak. Qualitatively, the anisotropy was in full agreement with earlier results from X‐ray diffraction, including a flip in molecular orientation with respect to the film substrate between solution‐cast and spin‐cast films. With the Monte Carlo technique, the spectra were fitted with a biaxial g tensor, an anisotropy parameter S, and an intrinsic width σ. The simulations showed that g could be treated as pseudo‐uniaxial, with the unique axis along the side chains rather than along the ring normal. Closed‐form analytical expressions relating g to the anisotropy were obtained and used for a quantitative assessment of the molecular anisotropy. Because the molecular g tensor for these materials was not known, a known value of S for one of the samples obtained by X‐ray diffraction was used for normalization. Fairly consistent values were obtained for both g and S. © 2003 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 41: 3011–3025, 2003     

Three-dimensional packing structure and electronic properties of biaxially oriented poly(2,5-bis(3-alkylthiophene-2-yl)thieno[3,2-b]thiophene) films

We use a systematic approach that combines experimental X-ray diffraction (XRD) and computational modeling based on molecular mechanics and two-dimensional XRD simulations to develop a detailed model of the molecular-scale packing structure of poly(2,5-bis (3-tetradecylthiophene-2-yl)thieno[3,2-b]thiophene) (PBTTT-C(14)) films. Both uniaxially and biaxially aligned films are used in this comparison and lead to an improved understanding of the molecular-scale orientation and crystal structure. We then examine how individual polymer components (i.e., conjugated backbone and alkyl side chains) contribute to the complete diffraction pattern, and how modest changes to a particular component orientation (e.g., backbone or side-chain tilt) influence the diffraction pattern. The effects on the polymer crystal structure of varying the alkyl side-chain length from C(12) to C(14) and C(16) are also studied. The accurate determination of the three-dimensional polymer structure allows us to examine the PBTTT electronic band structure and intermolecular electronic couplings (transfer integrals) as a function of alkyl side-chain length. This combination of theoretical and experimental techniques proves to be an important tool to help establish the relationship between the structural and electronic properties of polymer thin films.     

Crystalline-crystalline block copolymers of regioregular poly(3-hexylthiophene) and polyethylene by ring-opening metathesis polymerization

Block copolymers of regioregular poly(3-hexylthiophene) (P3HT) and polyethylene (PE) were synthesized through the chain transfer of olefin-terminated P3HT in the presence of cyclooctene via ring-opening metathesis polymerization (ROMP). Subsequent hydrogenation of the poly(cyclooctene) block yielded high molecular weight, crystalline-crystalline P3HT-PE block copolymers, which are thermally stable and resistant to solvents under ambient conditions. These copolymers were characterized by 1H NMR, DSC, and WAXS and represent the first materials of a class of crystalline-crystalline semiconducting-insulating block copolymers.     

Ultrathin films of semiconducting polymers on water

Ultrathin films of polythiophene derivatives spread on water were studied by means of synchrotron radiation, using grazing incidence diffraction and (specular) reflectometry to obtain the molecular orientation in the films. The semicrystalline films were anisotropic, showing a strong tendency of orienting the crystalline alpha-axis perpendicularly to the water subphase. The crystalline domains extend essentially through the entire sample thickness, found to be 10-15 nm. A large expansion of the unit cell alpha-parameter was seen upon doping the films in situ. The reflectometry data were well-fitted by a model with a sinusoidal density variation being damped toward the water subphase. This indicates that the crystalline order was most developed at the polymer-air interface and deteriorated down toward the water, possibly due to the hydrophobicity of the alkyl side chains.     

In situ studies of phase transitions in thin discotic films

The crystalline to liquid crystalline (Cr-LC) phase transition in thin films of zone-cast hexa-peri-hexabenzocoronene sixfold substituted with dodecyl side chains (HBC-C12H25) has been studied in detail using grazing incidence X-ray diffraction (GID), electron diffraction (ED), and variable angle spectroscopic ellipsometry (VASE), When heating the material, a first minor transition is observed around 42 degrees C. This change is attributed to alterations of the crystalline alkyl chain packing, which only slightly changes the electronic properties of the material. At higher temperatures of about 90 degrees C, but still significantly below the previously reported transition temperature in bulk, the Cr-LC transition is observed. An accompanying large increase in optical anisotropy is compatible with the X-ray data, showing a transition from the as-cast herringbone-like crystalline state to a highly ordered discotic hexagonal columnar LC phase. The structural transition has the macroscopic effect of increasing the film thickness. The high structural order of the as-cast low-temperature phase is only partly recovered after cooling, and the phase transition exhibits a large hysteresis. From the ellipsometry data, the dielectric tensor of HBC-C12H25 was refined to unprecedented detail.