Coordination properties of 6-deoxy-6-[1-(2-amino) ethylamino]-β-cyclodextrin and the ability of its copper(II) complex to recognize and separate amino acid enantiomeric pairs

The functionalized cyclodextrin 6-deoxy-6-[1-(2-amino)ethylamino]--cyclodextrin was synthesized, and an NMR, EPR, pH-metric, and calorimetric investigation was carried out in aqueous solution in order to ascertain its behaviour towards protonation and copper(II) complex formation. The thermodynamic parameters of the ternary complex formation with alanine, phenylalanine and tryptophan enantiomeric pairs were also determined (25° C andI=0.1 mol dm^–3). No thermodynamic enantioselectivity was observed in these systems, while a chiral, though poor, discrimination was observed in LEC: c.d. spectra also show enantiomeric stereoselectivity. The results of the present investigation, compared with previously reported results, suggest the occurence of acis-complex trans-complex equilibrium in such systems.     

The binding ability of iron bonded to porphodimethene: structural, magnetic, and electronic relationship to iron porphyrin complexes

The availability of the parent compound, meso-hexaethylporphodimetheneiron(II), [(Et6N4)Fe] (2), of this report results from a novel synthetic methodology that makes [Et6N4Li2] (1) easily available. The major focus is on how the axial positions, which are the key reactive sites in metalloporphyrins, and the electronic configuration of the metal can be affected by the breakdown of the aromaticity of the porphyrin skeleton and by the nonplanar conformation of the ligand. DFT calculations indicate a 3B1(dz2)1(dyz)1 ground state for 2 versus the 3A2(dxz)1(dyz)1 ground state in the porphyrin analogue. The intermediate-spin state (S = 1) of 2 changed drastically upon addition of one or two axial ligands, as hexacoordination is preferred by iron(II). The hexacoordinate complexes [(Et6N4)Fe(L)(L')] (L = L' = THF, 3; L = L' = Py, 4; L = PhNO, L' = Py, 14) have been isolated and structurally characterized. Strong-field ligands lead to a low-spin diamagnetic state for iron(II), namely for complexes 4-7, 9, and 14, whereas 3 is a typical d6 high-spin complex, as is the pentacoordinate [(Et6N4)Fe(CN)]Bu4N (8). The structural analysis showed common features for 6, 7, 9, and 14: i) a small displacement of the metal from the N4 plane, and ii) an N4 cavity, larger than that in the corresponding porphyrins, affecting the Fe-N bond lengths. The 1H NMR spectrum is quite diagnostic of the two-fold symmetry in the diamagnetic hexacoordinate complexes, revealing either a D2h or a C2v symmetry. The CO stretching frequency (1951 cm(-1)) in complex 6 probes the good electron density at the metal. The one-electron oxidation of 2 led to pentacoordinate iron(III) derivatives [(Et6N4)Fe(Cl)] (10), [(Et6N4)2Fe2(mu-O)] (11), and [(Et6N4)2Fe2(mu-p-OC6H4-O)] (12). Complex 10 is a typical high-spin iron(III) (5.85muB at 298 K), while 11 and 12 behave as antiferromagnetic coupled iron(III) (J = -9.4cm(-1), 12, and J = -115cm(-1), 11). In complexes 10, 11, and 12 iron is sitting in a quite distorted square pyramidal geometry, in which the ligand displays a very distorted roof conformation with different degrees of ruffling. Distinctive structural and magnetic features have been found for the nitrosyl derivative [(Et6N4)Fe-NO], which has a low-spin state (S = 1/2) and the following structural parameters: Fe-N-O, 147.3(2) degrees; Fe-N, 1.708(2) A; N-O, 1.172(3) A. A comparative structural, magnetic, and theoretical analysis of the compounds listed above has been made with the analogous porphyrin derivatives. The detailed structural investigation has been mapped through the X-ray analysis of 2, 7, 8, 9, 11, 13, and 14.     

A re-investigation of copper coordination in the octa-repeats region of the prion protein

An aqueous solution spectroscopic (Vis and EPR) study of the copper(II) complexes with the Ac-HGGG-NH2 and Ac-PHGGGWGQ-NH2 polypeptides (generically designated as L) suggests square base pyramids ascribable to [Cu(L)H(-2)] complex species, which contain three nitrogen donor atoms, arising from imidazole and peptide groups, in the equatorial plane and for a pseudo-octahedral geometry in the case of [CuLH-3]- and [Cu(L)H-4]2- which have four nitrogen donor atoms in their equatorial plane. The coordination sphere of the copper complex in the [Cu(L)H(-2)] species, which is present at neutral pH values, is completed by two oxygen donor atoms. ESI-MS spectra ascertained that water molecules are not present in the coordination equatorial plane of this latter species, in comparison with other copper(II) complexes with ligands bearing nitrogen and oxygen donor atoms and surely having equatorial water molecules. This indicates the coordination of a carbonyl oxygen atom in the equatorial plane has to be invoked. However, no direct proof about the involvement of a carbonyl group oxygen donor atom apically linked to copper was obtained, due to the flexibility of these structures at room temperature. Additionally, the low A(ll) value leads one to consider another oxygen atom of a carbonyl group being involved in the apical bond to copper in a fast exchange fashion. This apical interaction, which may also involve a water molecule, is more pronounced in the Cu-Ac-HGGG-NH2 than in the analogous Cu-Ac-PHGGGWGQ-NH2 system, probably because of the presence of tryptophan and proline in the polypeptide sequence.     

2-Mercaptomethyl-thiazolidines use conserved aromatic–S interactions to achieve broad-range inhibition of metallo-β-lactamases

Infections caused by multidrug resistant (MDR) bacteria are a major public health threat. Carbapenems are among the most potent antimicrobial agents that are commercially available to treat MDR bacteria. Bacterial production of carbapenem-hydrolysing metallo-β-lactamases (MBLs) challenges their safety and efficacy, with subclass B1 MBLs hydrolysing almost all β-lactam antibiotics. MBL inhibitors would fulfil an urgent clinical need by prolonging the lifetime of these life-saving drugs. Here we report the synthesis and activity of a series of 2-mercaptomethyl-thiazolidines (MMTZs), designed to replicate MBL interactions with reaction intermediates or hydrolysis products. MMTZs are potent competitive inhibitors of B1 MBLs in vitro (e.g., K_i = 0.44 μM vs. NDM-1). Crystal structures of MMTZ complexes reveal similar binding patterns to the most clinically important B1 MBLs (NDM-1, VIM-2 and IMP-1), contrasting with previously studied thiol-based MBL inhibitors, such as bisthiazolidines (BTZs) or captopril stereoisomers, which exhibit lower, more variable potencies and multiple binding modes. MMTZ binding involves thiol coordination to the Zn(ii) site and extensive hydrophobic interactions, burying the inhibitor more deeply within the active site than d/l-captopril. Unexpectedly, MMTZ binding features a thioether–π interaction with a conserved active-site aromatic residue, consistent with their equipotent inhibition and similar binding to multiple MBLs. MMTZs penetrate multiple Enterobacterales, inhibit NDM-1 in situ, and restore carbapenem potency against clinical isolates expressing B1 MBLs. Based on their inhibitory profile and lack of eukaryotic cell toxicity, MMTZs represent a promising scaffold for MBL inhibitor development. These results also suggest sulphur–π interactions can be exploited for general ligand design in medicinal chemistry.

Metallo-β-lactamases (MBLs) are major culprits of resistance to carbapenems in bacteria. A series of thiazolidines are potent MBL inhibitors, restoring the activity of carbapenems. Metal binding and sulphur–π interactions are key to inhibition.     

Minimum sum set coloring of trees and line graphs of trees

In this paper, we study the minimum sum set coloring (MSSC) problem which consists in assigning a set of x(v) positive integers to each vertex v of a graph so that the intersection of sets assigned to adjacent vertices is empty and the sum of the assigned set of numbers to each vertex of the graph is minimum. The MSSC problem occurs in two versions: non-preemptive and preemptive. We show that the MSSC problem is strongly NP-hard both in the preemptive case on trees and in the non-preemptive case in line graphs of trees. Finally, we give exact parameterized algorithms for these two versions on trees and line graphs of trees.     

On minimal forbidden subgraph characterizations of balanced graphs

A graph is balanced if its clique-matrix contains no edge–vertex incidence matrix of an odd chordless cycle as a submatrix. While a forbidden induced subgraph characterization of balanced graphs is known, there is no such characterization by minimal forbidden induced subgraphs. In this work, we provide minimal forbidden induced subgraph characterizations of balanced graphs restricted to graphs that belong to one of the following graph classes: complements of bipartite graphs, line graphs of multigraphs, and complements of line graphs of multigraphs. These characterizations lead to linear-time recognition algorithms for balanced graphs within the same three graph classes.     

Reflection of light by a slab containing electrically small dielectric spheres

Theoriginal and theenhanced Maxwell-Garnett estimates for the permittivity of a particulate medium are applied to the reflection of light by a composite dielectric slab. The reflection coefficients for incident s and p polarizations are calculated and some curves are plotted and discussed.     

The pi complexation of alkali and alkaline earth ions by the use of meso-octaalkylporphyrinogen and aromatic hydrocarbons

The full metallation of meso-octaalkylporphyrinogens [R8N4H4] (R=Et, 1; nBu, 2; CH2Ph, 3; (CH2)4, 4) with heavy alkali metals (M = K, Rb, Cs) leads to the porphyrinogen-M4 compounds, in which the solvation of the alkali cations is largely assured by the intra- and intermolecular phi-interactions with the pyrrolyl anions. Such a mode of complexation results in a structural diversity as a function of the meso substituents, the size of the metal ion, and the solvent. The structure of the unsolvated polymers [R8N4M4]n (R= Et, M=K, 5; M=Rb, 6; M=Cs, 7; R= (CH2)4, M = Rb, 8; M = Cs, 9) have been clarified through the X-ray analysis of 7 recrystallized from diglyme. The structure shows that the tetraanion binds two Cs ions inside the cavity, which display in one case eta1:eta1:eta1:eta1 and in the other eta5:eta5:eta5:eta5 interaction modes. Bidimensional polymerization is assured by four Cs ions, which each bind at the eta5 position on the exo face of each pyrrole. With bulkier meso substituents, different polymeric forms are obtained (R = nBu, M = K, 10; M = Rb, 11; M = Cs, 12), and their structures were clarified through the X-ray analysis of 10, which was recrystallized from dimethoxyethane. The polymeric units are made up by the monomeric units [Bu8N4K2]2-, in which one potassium is eta1:eta1:eta1:eta5 and the other eta5:eta1:eta5:eta1 bonded inside the porphyrinogen cavity. In the case of R=CH2Ph, the monomeric anion [(PhCH2)8N4K2]2- (13) has been structurally identified. The metallation of 1 and 2 with active forms of alkaline earth metals (M' = Ca, Sr, Ba) led to dinuclear compounds [R,N4M'2] (R = Et, M' = Ca, 14; M'=Sr, 15; M'=Ba, 16; R=nBu. M'=Ba, 18), in which both metals inside the cavity are eta1:eta3:eta1:eta3 (Ca) and eta1:eta5:eta1:eta5 (Sr and Ba) bonded to the porphyrinogen tetraanion. The coordination sphere of each metal ion is completed by two THF molecules, which, in the case of Ba, are easily replaced by an arene ring [Bu8N4Ba2(eta6-arene)2] (arene=durene, 22; naphthalene, 23; toluene, 24; benzene, 25). The X-ray structures of 14, 15, 18, 22, and 23 are described in detail. We have tried to establish a relationship between the solid-state and solution structures by analyzing the 1H NMR spectra of the porphyrinogen complexes.     

Complexes of Cu(II) with 2,2'-bipyridyl and maleic or phthalic acid

The stability constants of ternary copper(II) complexes with 2,2'-bipyridyl and a dicarboxylic acid (maleic and phthalic) have been determined by means of pH-titrations at 25 +/- 0.1 degrees and an ionic strength of 0.1M (Na,H)ClO(4). The stabilities of ternary complexes are compared with those of similar complexes and related to the size of the chelate rings and the nature of the dicarboxylic ligands.