Computer-Assisted Solution of Chemical Problems—The Historical Development and the Present State of the Art of a New Discipline of Chemistry

The topic of this article is the development and the present state of the art of computer chemistry, the computer-assisted solution of chemical problems. Initially the problems in computer chemistry were confined to structure elucidation on the basis of spectroscopic data, then programs for synthesis design based on libraries of reaction data for relatively narrow classes of target compounds were developed, and now computer programs for the solution of a great variety of chemical problems are available or are under development. Previously it was an achievement when any solution of a chemical problem could be generated by computer assistance. Today, the main task is the efficient, transparent, and non-arbitrary selection of meaningful results from the immense set of potential solutions—that also may contain innovative proposals. Chemistry has two aspects, constitutional chemistry and stereochemistry, which are interrelated, but still require different approaches. As a result, about twenty years ago, an algebraic model of the logical structure of chemistry was presented that consisted of two parts: the constitution-oriented algebra of be- and r-matrices, and the theory of the stereochemistry of the chemical identity group. New chemical definitions, concepts, and perspectives are characteristic of this logic-oriented model, as well as the direct mathematical representation of chemical processes. This model enables the implementation of formal reaction generators that can produce conceivable solutions to chemical problems—including unprecedented solutions—without detailed empirical chemical information. New formal selection procedures for computer-generated chemical information are also possible through the above model. It is expedient to combine these with interactive methods of selection. In this review, the Munich project is presented and discussed in detail. It encompasses the further development and implementation of the mathematical model of the logical structure of chemistry as well as the experimental verification of the computer-generated results. The article concludes with a review of new reactions, reagents, and reaction mechanisms that have been found with the PC-programs IGOR and RAIN.     

Model compounds of caged capsaicin: design, synthesis, and photoreactivity

Molecules were prepared with substituted nitrobenzyl groups covalently bonded to N-(4-hydroxy-3-methoxybenzyl)acetamide (2) by ether or carbonate linkages. These compounds decomposed under irradiation at 363 nm. Those with carbonate linkages decomposed at slower rates than those with ether linkages. Molecules with dimethoxy-substituted benzyl groups decomposed more slowly than monomethoxy-substituted benzyl groups due to the electronic characteristics of the benzylic carbon.     

The effect of organic nitrogenous compound content and different pretreatments on agricultural lignocellulosic biomass characterization methods

Considering the diverse compounds contained in lignocellulosic biomasses, especially in agricultural biomass, and the complexity of the different chemical and physical structural connections between these compounds, appropriate analytical methods must be used to characterize these biomasses. In this study, two extraction processes and two analytical methods were used to characterize the main compounds in corn stover residue before and after different pretreatments. The results of this study suggest that pretreatment and organic nitrogenous compound content greatly affect the most common extraction processes and analytical methods used for biomass characterization. For raw corn stover biomass residue, the extraction process using neutral detergent fiber solvent removed more extractives and more organic nitrogenous compounds (18.5 and 2.4%, respectively) than the combination of extractions using water and ethanol (13.4% of extractives and 1.8% of organic nitrogenous compounds). This study also showed that the different pretreatments improve the efficiency of both extraction processes and that these processes seem to be more effective with the neutral detergent solvent extraction than the combination of extractions with water and ethanol. Organic nitrogenous compounds represent a significant proportion of agricultural biomasses; therefore, insufficient organic nitrogenous compound extraction can cause interference with different characterization methods. It was observed that, for the same analytical method and with the raw biomass, the value of insoluble lignin after the extractions with water and ethanol was higher than that obtained after the extraction with the neutral detergent solvent 16.1 and 13.2%, respectively. This can be explained by the fact that there are more organic nitrogenous compounds in the samples after the extraction with water and ethanol than in the samples after the extraction with the neutral detergent solvent. This result was also observed for the pretreated samples. These results, therefore, show that the extraction step is very important because it can remove more organic nitrogenous compounds before the main compounds are characterized (lignin, carbohydrates).     

Effects of different composition ratio on the dielectric relaxation and dynamic mechanical properties of poly(ω‐dodecalactam‐co‐ε‐caprolactam‐co‐propylene oxide) copolymers

The molecular dynamics of new poly (ω‐dodecalactam‐co‐ε‐caprolactam‐co‐propylene oxide) copolymers (DL/CL/PAC) has been investigated by using dynamic mechanical thermal analysis (DMTA) and dielectric relaxation spectroscopy (DRS) measurements. The copolymers were synthesized via anionic polymerization of relevant lactams activated with carbamoyl derivatives of telechelic hydroxyl terminated polypropylene oxide with isophorone diisocyanate (PAC). The calorimetric, X‐ray diffraction, and DMTA measurements were performed to recognize the influence of the composition ratio and the type of PAC on the physical, thermal, and mechanical properties of the synthesized copolymers. The DRS was used to study the frequency dependence of the dielectric permittivity of some isotherms from ?110 to 145 °C. Copolymerization of ε‐caprolactam with about 10 wt % ω‐dodecalactam results in a copolymer that has lower water absorption, a melting point close to that of polyamide 6 and has a high enough degree of crystallinity in respect to high storage modulus. Five dielectric relaxations have been observed in the dielectric spectra, three at lower temperature and two at higher temperature. The copolymers have two glass transition temperatures for polyamide segments and polyether blocks, indicating microphase separation in the copolymers. Other studies directed toward molecular dynamics of polyamide DL/CL/PAC copolymers have not been reported. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2010     

Dynamic 13C NMR studies of ligand exchange in linear (d10) silver(I) and gold(I) and square-planar (d8) rhodium(I) homoleptic metal carbonyl cations in superacidic media

The dynamic CO exchange of the monovalent metal carbonyl cations [Ag(13CO)]+, [Au(13CO)2]+-Au(13CO) SO3F and [Rh(12CO)4-x(13CO)x]+ (x < or = 1) in superacidic solutions was studied by variable-temperature 13C NMR methods. The exchange rates are strongly dependent on the acidity of the solvent, the concentration of metal carbonyl cations and temperature. Whereas a suitable exchange rate of the Ag(I) system is only accessible in magic acid (HSO3F-SbF5), the more stable Au(I) and Rh(I) systems were studied in the less acidic fluorosulfuric acid. Selected solutions of Ag(I), Rh(I) and Au(I) yielded activation barriers deltaG* of 42.7, 43.5, and 56.2 kJ mol(-1) respectively.     

A new estimate on the indirect Coulomb energy

Here we prove a new lower bound on the indirect Coulomb energy in quantum mechanics, in terms of the single particle density of the system. The new universal lower bound is an alternative to the classical Lieb–Oxford bound (with a smaller constant, C = 1.45 < C_LO = 1.68) but involving an additive kinetic energy term of the single particle density as well. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Cohomological Mackey functors in number theory

We prove relations between the evaluations of cohomological Mackey functors over complete discrete valuation rings or fields and apply this to Mackey functors that arise naturally in number theory. This provides relations between λ- and μ-invariants in Iwasawa theory, between Mordell-Weil groups, Shafarevich-Tate groups, Selmer groups and zeta functions of elliptic curves, and between ideal class groups and regulators of number fields.