Comparison of two force fields in MD-simulations of α-helical structures in keratins

Molecular dynamic (MD) simulations based on two different force fields, CVFF and CFF91, were carried out in order to check their feasibility for the structural investigation of the wool intermediate filament (IF) monomeric unit. Selecting an ideal α-helix as start conformation, all MD-simulations with CVFF in vaccum show the α-helix to be unstable. Independently of the amino acid sequence of the α-helix, a new helical structure with a larger diameter arises during the MD-simulation, due to a shift of the intrahelical hydrogen bonds. However in simulations with surrounding water the α-helix remains stable throughout the simulations with the CVFF force field. In contrast to this, MD-simulations in vaccume based on the CFF91 force field are able to determine different stabilities for the α-helical start conformation of various IF-segments, that agree well with secondary structure predictions. The simulation results obtained with CFF91 in vacuum can like wise be verified using an explicit water environment. We found that higher partial charges attributed to the atoms of the amide groups that form the intrahelical hydrogen bonds are the reason for the superiority of the CFF91 force field.     

Preparation of dimethoxyborane and analysis by Fourier transform infrared spectroscopy

Dimethoxyborane was prepared by the reaction of trimethoxyboroxine, sodium borohydride and trimethyl borate in diethylene glycol dimethyl ether solvent at 70°C under atmospheric pressure followed by distillation to increase the purity and analyzed in liquid phase by FT-IR. The concentration of dimethoxyborane was identified by hydrolysis with water, which yields boric acid, methanol and hydrogen, whereas the generated hydrogen was analyzed by the mass detector of a volumetric flow apparatus. The FT-IR absorbance peak area showed a linear dependence on dimethoxyborane concentration in the wavenumber range 873 to 950 cm⁻¹ for samples with dimethoxyborane concentrations 0 to 6.2 wt% in trimethyl borate. Data fitting using the least square method gave an R ² value of 97%.     

Nanoscale molecular superfluidity of hydrogen

We present a microscopic quantum theoretical analysis of the nanoscale superfluid properties of solvating clusters of para-H2 around the linear OCS molecule. Path-integral calculations with N=17 para-H2 molecules, constituting a full solvation shell, show the appearance of a significant superfluid response to rotation around the molecular axis at T=0.15 K. This low-temperature superfluid response is highly anisotropic and drops sharply as the temperature increases to T approximately 0.3 K. These calculations provide definitive theoretical evidence that an anisotropic superfluid state exists for molecular hydrogen in this microscopic solvation layer.     

Ohmic and step noise from a single trapping center hybridized with a Fermi sea

We show that single electron tunneling devices such as the Cooper-pair box or double quantum dot can be sensitive to the zero-point fluctuation of a single trapping center hybridized with a Fermi sea. If the trap energy level is close to the Fermi sea and has linewidth gamma > k(B)T, its noise spectrum has an Ohmic Johnson-Nyquist form, whereas for gamma < k(B)T the noise has a Lorentzian form expected from the semiclassical limit. Trap levels above the Fermi level are shown to lead to steps in the noise spectrum that can be used to probe their energetics, allowing the identification of individual trapping centers coupled to the device.     

Minimum construction of two-qubit quantum operations

Optimal construction of quantum operations is a fundamental problem in the realization of quantum computation. We here introduce a newly discovered quantum gate, B, that can implement any arbitrary two-qubit quantum operation with minimal number of both two- and single-qubit gates. We show this by giving an analytic circuit that implements a generic nonlocal two-qubit operation from just two applications of the B gate. Realization of the B gate is illustrated with an example of charge-coupled superconducting qubits for which the B gate is seen to be generated in shorter time than the CNOT gate.     

Improved measurement of the hydrogen 1S-2S transition frequency

We have measured the 1S-2S transition frequency in atomic hydrogen via two-photon spectroscopy on a 5.8 K atomic beam. We obtain f(1S-2S) = 2,466,061,413,187,035 (10) Hz for the hyperfine centroid, in agreement with, but 3.3 times better than the previous result [M. Fischer et al., Phys. Rev. Lett. 92, 230802 (2004)]. The improvement to a fractional frequency uncertainty of 4.2 × 10(-15) arises mainly from an improved stability of the spectroscopy laser, and a better determination of the main systematic uncertainties, namely, the second order Doppler and ac and dc Stark shifts. The probe laser frequency was phase coherently linked to the mobile cesium fountain clock FOM via a frequency comb.