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Nazarov PV Apanasovich VV Lutkovski VM Yatskou MM Koehorst RB Hemminga MA 《Journal of chemical information and computer sciences》2004,44(2):568-574
Simulation-based fitting has been applied to data analysis and parameter determination of complex experimental systems in many areas of chemistry and biophysics. However, this method is limited because of the time costs of the calculations. In this paper it is proposed to approximate and substitute a simulation model by an artificial neural network during the fitting procedure. Such a substitution significantly speeds up the parameter determination. This approach is tested on a model of fluorescence resonance energy transfer (FRET) within a system of site-directed fluorescence labeled M13 major coat protein mutants incorporated into a lipid bilayer. It is demonstrated that in our case the application of a trained artificial neural network for the substitution of the simulation model results in a significant gain in computing time by a factor of 5 x 10(4). Moreover, an artificial neural network produces a smooth approximation of the noisy results of a stochastic simulation. 相似文献
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V. V. Apanasovich E. G. Novikov N. N. Yatskov R. B. M. Koehorst T. J. Schaafsma A. van Hoek 《Journal of Applied Spectroscopy》1999,66(4):613-616
Results of investigation of the optical properties of zinc complexes of mesotetraphenylporphyrin and monopyridyltriphenylporphyrin
in impurity-free organic solvent are presented. Analyses of absorption and emission spectra and fluoresence decay kinetics
in terms of both a sum of exponentials and using simulation of energy-transformation processes in a tetramer-type Zn-porphyrin
complex compound are carried out.
Reported at the VIIIth International Conference on Spectroscopy of Porphyrins and Their Analogs, Minsk, September 22–26, 1998.
Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 66, No. 4, pp. 549–552, July–August, 1999. 相似文献
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N. N. Yatskov V. V. Apanasovich R. B. M. Koehorst A. van Hoek T. J. Schaafsma 《Journal of Applied Spectroscopy》2003,70(3):372-377
The photophysical properties of thin films of Zn-monopyridyltriphenylporphyrin (Zn(4-Py)TrPP) obtained by the method of centrifugation on a quartz film substrate have been investigated. The results of the analysis of the measured excitation and luminescence spectra and also of the kinetic curves of fluorescence depolarization, as they decay, of the Zn(4-Py)TrPP films permit the conclusion that Zn-meso-monopyridylporphyrins self-organize into aggregates. The symmetric closed tetramer ([Zn(4-Py)TrPP]4) seems to be the most probable aggregate of Zn-meso-monopyridylporphyrins. 相似文献
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We present a simulation model for a stream of photon counts that can be detected in fluorescence fluctuation spectroscopy
systems from diffusing molecules undergoing spontaneous transitions between radiative and nonradiative states. Using our model,
we can obtain various characteristics of a random stream of photon counts which allows us to test fluorescence fluctuation
spectroscopy methods and to predict the results of full-scale experiments. 相似文献
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