In vitro antioxidant activities of five β-carboline alkaloids,molecular docking,and dynamic simulations

Structural Chemistry - Experimental and computational studies were performed to determine the antioxidant activities of harmine, harmaline, harmalol, harmane, and...     

Molecular docking,ADME/Tox prediction,and in vitro study of the cell growth inhibitory activity of five β-carboline alkaloids

Structural Chemistry - In a continuing effort to find new cytotoxic, antitumor, and less toxic agents from β-carbolines derivatives, using experimental and computational studies, five...     

Intersubband energies in Al1−yInyN/Ga1−xInxN heterostructures with lattice constant close to aGaN

We have studied the conduction band profile and the intersubband transition energy, E₁₂, of Al_1−yIn_yN/Ga_1−xIn_xN quantum well structures. We have considered how material parameters such as non-parabolicity and the uncertainty in the bowing parameter affect E₁₂ and the corresponding wavelength, λ₁₂. The calculations include strain and cover the transition range from telecommunication wavelengths (1.55 μm) to the mid-infrared (∼ 10 μm).     

Combining ligand-based and structure-based drug design approaches to study the structure-activity relationships of a β-carboline derivative series

In this study, we investigated the structure-activity relationships of a series of β-carboline alkaloid derivatives using the 2D-QSAR and molecular docking, in order to identify the mode of interaction between β-carboline derivatives and the PLK1 kinase, and determine their key substituents responsible for the cytotoxic activity. The obtained QSAR models using multiple linear regression (MLR) and partial least squares (PLS) methods showed a high correlation between the experimental activity and the predicted one by PLS (R²_PLS?=?0.82, q²?=?0.72) and MLR (R²_MLR?=?0.82, q²?=?0.72). An external dataset was used to test the extrapolation power of the models which resulted in an R²_PLS (EV)?=?0.76; RMSE?=?0.39. The 2D-QSAR analysis reveals that lipophilicity plays an important role in the cytotoxic activity of this group of β-carboline derivatives. Indeed, the molecular docking study into the active site of the polo-like kinase (PLK1) revealed that the most active ligand 57 shows higher binding energy and interacts, especially by H-bonds and hydrophobic interactions, with the active site of the PLK1 kinase. Consequently, the results obtained from the 2D-QSAR and docking studies provided a useful tool to design new and potent β-carboline derivatives as cytotoxic agents.