Scoring functions: A view from the bench

Computational approaches to drug design are presently hindered by the complexity of the physical chemistry which underlies weak, non- covalent interactions between protein targets and small molecule ligands. Although a number of programs are now available for the design of novel potential ligands, it remains a key problem to rank these rapidly and reliably by estimated binding affinity. Such a step is necessary to select only the most promising candidates for synthesis and experimental characterisation. To calculate ligand affinity quickly and reliably is an extremely difficult problem, but it may well prove possible to estimate sufficiently accurately given an appropriate set of parameters to score individual protein–ligand interactions. Improvements in the situation will require a wider set of thermodynamically characterised systems than is currently available.     

Exploring bioanalytical applications of assisted protein reassembly

Reassembly of protein from its peptide fragments is a technique that can have many applications in the bioanalytical field. Typically, a reporter protein fragmented into its two peptides is employed as a label in this study. This fragments of peptide can reassemble yielding an active functional reporter. This reassembly of the protein can be assisted by non-covalently interacting peptides or proteins, which are attached to the fragmented reporter. This technique has been employed in several applications including study of protein–protein interactions, antibody screening, immunoassays, and high-throughput screening. This review focuses on different reporters employed in the study of reassembly of proteins and applications of this strategy in bioanalysis.     

蛋白质组学技术在动物科学中的研究进展

蛋白质组学在后基因组时代以其独特的角度和重要的作用已成为生命科学领域研究的热点内容。动物科学作为生命科学的一个重要分支,其相关研究对人类的生活有着重要意义。为了系统地了解和展望蛋白质组学技术在动物科学中的研究进展,综述了蛋白质组学的概念及其相关技术,归纳和评析了近年来蛋白质组学在动物繁殖、营养、遗传育种和疾病防治方面的研究现状。     

孕激素相关子宫内膜蛋白在胃癌早期诊断、预后中的作用

为使用生物信息学系统分析孕激素相关子宫内膜蛋白(Progestagen-associated endometrial protein, PAEP)在胃癌中的早期诊断和预后预测性能及免疫浸润相关性,该研究构建预测模型ROC曲线和偏差校正曲线检验其性能准确性,并通过细胞实验进一步验证分析结果.生信分析结果显示,与正常组织相比,胃癌组织中PAEP的表达较高,在早期（T1期、N0期、M0期）即有统计学意义（P＜0.001）,且诊断胃癌的准确性较高（ROC曲线下面积为0.889）;PAEP高表达的胃癌患者预后较差（P≤0.001）;TNM分期越晚,年龄越大,PAEP表达越高,胃癌患者生存概率越低,偏差校正曲线接近理想曲线（45°线）,显示预测结果良好;PAEP的表达与胃癌中的中性粒细胞、巨噬细胞的浸润水平呈正相关趋势,与B细胞、中央记忆型T细胞、T细胞呈显著的负相关趋势.qRT-PCR和Western blot结果显示,HGC-27、BGC-823、MKN-45、SGC-7901和AGS细胞中PAEP基因转录水平和蛋白表达水平均显著高于GES-1. 结果表明了PAEP 蛋白可用于胃癌诊断和预后的生物标志物,并进行了实验验证,其机制与免疫有关.     

山羊血液蛋白多态性的研究动态

综述了山羊血液蛋白多态性的研究动态,较详细地介绍了山羊血液生化遗传标记的研究现状及其在山羊育种中的应用,并对其应用前景作了展望     

Cloning and expression of the vp39 gene ofBombyx mori nuclear polyhedrosis virus inE. coli

The nuclear capsid protein gene (vp39) ofBombyx mori nuclear polyhedrosis virus (BmNPV) was amplified successfully by PCR technique and inserted into pGEM 3zf(+). The 5′ and 3′ terminal area of the amplified vp39 gene were sequenced with silver-staining dideoxy method. Bmvp39 gene was sub-cloned into the expression vector pRSET-A, and transformed intoE. coli BL21. This gene was highly expressed by IPTG induction. SDS-PAGE analysis showed that the expressed protein is about 38 kd, and the expressed amount reached maxium in 4 h with IPTG induction. Supported by the National Natural science Foundation of China and the Doctoral Foundation of Edn carto Committee Liu Deli: born in 1954, Doctoral Candidate from Huazhong Normal University To whom correspondence should be addressed: (027-7882712-2938)     

莲子叶蛋白体的类型,来源与发育

莲子叶于发育的１０￣２８ｄ,以不同速率在叶肉细胞中大量积累贮存蛋白,并以不同方式组装许多形态各异、结构不同的蛋白体。按其来源与发育的特点可分４种类型：①粗面球状蛋白体;②光面球状蛋白体;③杯状蛋白体;④淀粉蛋白体。发育顺序是①,②类先形成,③,④类后发生;②类的发育贯穿整个贮存蛋白的积累期,比较了莲与其他植物蛋白体的异同。     

小麦耐盐细胞系脯氨酸SOD酶核酸和蛋白质合成动态分析

对已筛选出的小麦耐盐细胞系的耐盐稳定性进行有关生理、生化分析。结果表明：耐盐细胞系脯氨酸含量不仅稳定,而且高于对照;ＳＯＤ活性在耐盐系增加,耐盐系对一定的盐浓度损伤ＤＮＡ修复能力大于对照系,耐盐系ＲＮＡ和蛋白质合成量分别是对照的５．４和４．５倍,并对小麦耐盐性的有关问题进行了讨论。     

细胞分裂素对大豆叶片衰老过程中蛋白激酶基因表达的影响

利用真核生物催化丝氨酸／苏氨酸残基磷酸化的蛋白激酶ＶＩ和Ⅷ保守区设计兼并引物,进行ＲＴ－ＰＣＲ扩增反应,研究大豆叶片衰老过程中蛋白激酶基因表达的变化及外源细胞分裂素处理的作用。结果表明人工合成的细胞分裂素－６ＢＡ预处理很可能在转录水平上正向调节一些蛋白激酶基因的表达,而诱导衰老处理则起负调控作用。     

黄旗海产卤虫(Artemiapathenogenetica)成虫干片蛋白质、脂肪酸、氨基酸和矿物质的分析

对黄旗海产卤虫（Ａｒｔｅｍｉａｐａｔｈｅｎｏｇｅｎｅｔｉｃａ）成虫干片的蛋白质、脂肪酸、氨基酸和部分矿物质进行了初步分析．结果表明,粗蛋白含量为５４．１４％,脂肪酸中亚麻酸的含量为１５．０７％,蛋白质中的１７种氨基酸和部分矿物质的含量也很丰富,由此说明从盐碱湖中开发利用卤虫资源,使之成为新的食品源和优质饲料有着广泛的前景．