Study on Metronidazole Acid-Base Behavior and Speciation with Ca2+ for Potential Applications in Natural Waters

Metronidazole (MNZ) is an antibiotic widely used for the treatment of various infectious diseases and as an effective pesticide agent for the cultivation of chickens and fish. Its high resistance to purification processes and biological activity has led to the classification of MNZ as an emerging contaminant. A speciation study, aimed to define the acid-base properties of MNZ and its interaction with Ca²⁺, commonly present in natural waters, is reported. The protonation constants of MNZ, as well as the formation constant value of Ca²⁺-MNZ species, were obtained by potentiometric titrations in an aqueous solution, using NaCl as background salt at different ionic strengths (0.15, 0.5, 1 mol L⁻¹) and temperature (15, 25 and 37 °C) conditions. The acid-base behavior and the complexation with Ca²⁺ were also investigated by ¹H NMR and UV-Vis titrations, with results in very good agreement with the potentiometric ones. The dependence of the formation constants on the ionic strength and temperature was also determined. The sequestering ability of MNZ towards Ca²⁺ was defined by the empirical parameter pL_0.5 at different pH and temperature values. The speciation of MNZ simulating sea water conditions was calculated.     

Photoluminescence Mechanism of Carbon Dots: Triggering Multiple Color Emissions through Controlling the Degree of Protonation

Carbon dots (CDs) have excellent optical properties, low toxicity and easy preparation, which have led to them being widely used in biomedicine, sensing and optical devices. However, although great progress has been made in the preparation of CDs, the detailed exploration of their photoluminescence (PL) mechanism is still under debate due to their complex structures and surface functionalities. Here, we proposed a single change in the pH of the synthesis condition, which had no effect on the CDs intrinsic core states and avoided the mutual influence of multiple PL origins. The m-phenylenediamine (m–PD) served as a carbon source, whose protonation degree determined the surface state of the resulting CDs and the accompanying fluorescence characteristics. The as-obtained CDs materials can be applied in the chemical sensor and anti-counterfeiting fields in a targeted manner. Therefore, our work not only contributes to the explanation of the CDs PL mechanism, but also obtains a series of CDs materials with controllable PL properties.     

Effect of micelles on pKa* of acridine: a spectroscopic study

The effect of anionic, nonionic and cationic surfactants on the protonation reaction of acridine in an excited state has been studied. In the case of sodium decyl sulfate and sodium dodecyl sulfate, the observed shift in pK * to a more alkaline region was +0.6 and +0.9 units (from 9.9 to 10.5 and 10.8 respectively), which corresponds to a decrease in the Gibbs free energy by 3.5 and 5.0 kJ mol^–1.     

Synthesis and Supramolecular Functional Assemblies of Ratiometric pH Probes

Tracking pH with spatiotemporal resolution is a critical challenge for synthetic chemistry, chemical biology and beyond. Over the last decade, different small probes and supramolecular systems have emerged for in cellulo or in vivo pH tracking. However, pH reporting still presents critical limitations, such as background reduction, improved sensor stability, cell targeting, endosomal escape, near- and far-infrared ratiometric pH tracking and adaption to new imaging techniques (i.e., super-resolution). These challenges will require the combined efforts of synthetic and supramolecular chemistry working together to develop the next generation of smart materials that will resolve current limitations. Herein, recent advances in the synthesis of small fluorescent probes, together with new supramolecular functional systems employed for pH tracking, are described with an emphasis on ratiometric probes. The combination of organic synthesis and stimuli-responsive supramolecular functional materials will be essential to solve future challenges of pH tracking, such as improved signal to noise ratio, on target activation and microenvironment reporting.     

Cellular Cations Control Conformational Switching of Inositol Pyrophosphate Analogues

The inositol pyrophosphate messengers (PP‐InsPs) are emerging as an important class of cellular regulators. These molecules have been linked to numerous biological processes, including insulin secretion and cancer cell migration, but how they trigger such a wide range of cellular responses has remained unanswered in many cases. Here, we show that the PP‐InsPs exhibit complex speciation behaviour and propose that a unique conformational switching mechanism could contribute to their multifunctional effects. We synthesised non‐hydrolysable bisphosphonate analogues and crystallised the analogues in complex with mammalian PPIP5K2 kinase. Subsequently, the bisphosphonate analogues were used to investigate the protonation sequence, metal‐coordination properties, and conformation in solution. Remarkably, the presence of potassium and magnesium ions enabled the analogues to adopt two different conformations near physiological pH. Understanding how the intrinsic chemical properties of the PP‐InsPs can contribute to their complex signalling outputs will be essential to elucidate their regulatory functions.     

Cleavage of Unactivated Si−C(sp3) Bonds with Reed's Carborane Acids: Formation of Known and Unknown Silylium Ions

An efficient method for the benzenium‐ion‐mediated cleavage of inert Si−C(sp³) bonds is reported. Various tetraalkylsilanes can thus be converted into the corresponding counteranion‐stabilized silylium ions. The reaction is chemoselective in the case of hexamethyldisilane. Computations reveal a mechanism with backside attack of the proton at one of the alkyl groups. Several activated Si−C(spⁿ) bonds (n=3–1) react equally well, and the procedure can be extended to the generation of stannylium ions.     

Theoretical study of the interaction of a proton with the O, F and Cl atoms of enflurane (CHFCl–CF2–O–CHF2)

Ab initio MP2 and density functional B3LYP calculations were performed to investigate the interaction of a proton with the O, F and Cl atoms of enflurane (CHFCl–CF₂–O–CHF₂) in the gas phase. The study included the optimized structures, proton affinities, interactions energies and thermodynamic properties of protonated enflurane. The proton affinities (PAs) of the O and Cl atoms are 154.5 and 139.8 kcal mol⁻¹, respectively, whereas PAs of five of the fluorine atoms are between 143.6 and 165.5 kcal mol⁻¹ (MP2 results). In contrast to protonation at the O and Cl atoms, protonation at each of the F atoms of enflurane reveals a striking result, it leads to a cleavage of the C–F bond and formation of an ion–dipole complex between the enfluranyl cation and neutral hydrogen fluoride. The [(enfluranyl)⁺FH] complexes are weakly bound, the SAPT-calculated interaction energy varies between −12.5 and −11.7 kcal mol⁻¹. The long range attraction in these complexes is dominated by the electrostatic term (70%), whereas the induction and dispersion components contribute by about 15% each. Protonation at the chlorine atom of enflurane does not lead to a cleavage of the C–Cl bond. For the O-protonated enflurane the results from the natural bond orbital analysis (NBO) are discussed in details.     

Molecular Mechanism of a Hotdog‐Fold Acyl‐CoA Thioesterase

Thioesterases are enzymes that hydrolyze thioester bonds between a carbonyl group and a sulfur atom. They catalyze key steps in fatty acid biosynthesis and metabolism, as well as polyketide biosynthesis. The reaction molecular mechanism of most hotdog‐fold acyl‐CoA thioesterases remains unknown, but several hypotheses have been put forward in structural and biochemical investigations. The reaction of a human thioesterase (hTHEM2), representing a thioesterase family with a hotdog fold where a coenzyme A moiety is cleaved, was simulated by quantum mechanics/molecular mechanics metadynamics techniques to elucidate atomic and electronic details of its mechanism, its transition‐state conformation, and the free energy landscape of the process. A single‐displacement acid‐base‐like mechanism, in which a nucleophilic water molecule is activated by an aspartate residue acting as a base, was found, confirming previous experimental proposals. The results provide unambiguous evidence of the formation of a tetrahedral‐like transition state. They also explain the roles of other conserved active‐site residues during the reaction, especially that of a nearby histidine/serine pair that protonates the thioester sulfur atom, the participation of which could not be elucidated from mutation analyses alone.     

Protonation of Nitramines: Where Does the Proton Go?

The reactions of nitramine, N ‐methyl nitramine, and N ,N ‐dimethyl nitramine with anhydrous HF and the superacids HF/MF₅ (M=As, Sb) were investigated at temperatures below −40 °C. In solution, exclusive O‐protonation was observed by multinuclear NMR spectroscopy. Whereas no solid product could be isolated from the neat HF solutions even at −78 °C, in the HF/MF₅ systems, protonated nitramine MF₆⁻ salts were isolated for the first time as moisture‐sensitive solids that decompose at temperatures above −40 °C. In the solid state, depending on the counterion, O‐protonated or N‐protonated cations can be formed, in accord with theoretical calculations which show that the energy differences between O‐protonation and N‐protonation are very small. The salts [H₂N‐NO₂H][AsF₆], [H₃N‐NO₂][SbF₆], [MeHNNO₂H][SbF₆], and [Me₂NNO₂H][SbF₆] were characterized by their X‐ray crystal structures.