Fully quantum mechanical energy optimization for protein-ligand structure

We present a quantum mechanical approach to study protein-ligand binding structure with application to a Adipocyte lipid-binding protein complexed with Propanoic Acid. The present approach employs a recently develop molecular fractionation with a conjugate caps (MFCC) method to compute protein-ligand interaction energy and performs energy optimization using the quasi-Newton method. The MFCC method enables us to compute fully quantum mechanical ab initio protein-ligand interaction energy and its gradients that are used in energy minimization. This quantum optimization approach is applied to study the Adipocyte lipid-binding protein complexed with Propanoic Acid system, a complex system consisting of a 2057-atom protein and a 10-atom ligand. The MFCC calculation is carried out at the Hartree-Fock level with a 3-21G basis set. The quantum optimized structure of this complex is in good agreement with the experimental crystal structure. The quantum energy calculation is implemented in a parallel program that dramatically speeds up the MFCC calculation for the protein-ligand system. Similarly good agreement between MFCC optimized structure and the experimental structure is also obtained for the streptavidin-biotin complex. Due to heavy computational cost, the quantum energy minimization is carried out in a six-dimensional space that corresponds to the rigid-body protein-ligand interaction.     

An attempt on the VOC oxidation using mechanically activated catalyst

A catalytic action of the mechanochemical products of copper hydroxocarbonate with calcium carbonate was investigated in n-butyl alcohol oxidation tests. The solid products of high-energy milling were identified using thermogravimetry supplemented by X-ray diffraction method. It was shown that the mechanical activation induces more effective tested catalyst because it promotes the alcohol conversion at lower temperatures than that unmilled one. This revised version was published online in July 2006 with corrections to the Cover Date.     

Vibrational analysis of 3-trifluoromethylphenol

The molecular geometry and molecular vibrations of 3-trifluoromethylphenol have been investigated by means of quantum chemical calculations and vibrational spectroscopy. The computations indicated the preference of the conformer with the OH hydrogen pointing in the direction of the trifluoromethyl group by 0.9 kJ/mol with respect to the anti conformer. FT-IR spectra of the vapour and CCl₄ solution as well as FT-IR and FT-Raman spectra of the pure liquid have been recorded in the range of 4000–150 cm⁻¹. The interpretation of the spectra was based on a scaled quantum mechanical (SQM) analysis for which the initial force field was calculated at the Becke3-Lee-Yang-Parr (B3LYP) DFT level supplemented with a 6-311++G** basis set. Using 11 scale factors refined in the present study an rms deviation of 7.6 cm⁻¹ between the experimental and SQM frequencies has been achieved. On the basis of the computations 40 of the total of 42 fundamentals of the title compound have been assigned.     

Solid state extrusion of thermoplastic elastomers 4

A solid state extrusion technique is applied as to produce oriented block copoly(ether ester) under various physical conditions. The morphology of the extruded samples is characterized in relation to the extrusion parameters and hard segment compositions of the polymer, using thermal analysis and X-ray methods. The lateral dimensions of the crystalline domains are found to be approximately 150 Å depending on the extrusion conditions. The statistics of the long range periodicity of the structure along the extrusion direction is in agreement with a one-dimensional two phase model, the crystalline portion of which does not vary much in thickness (35 – 45 Å). The unexpected increase in the long period and the thermal shrinkage suggest the existence of strained interlamellar amorphous chains (tie molecules). The observed variations in tensile properties are interpreted under the assumption that both the number of such tie molecules and their fully extended lengths are determined by the hard segment composition and the extrusion conditions. It is also argued that the increase in the glass transition temperature is not only a function of the composition of hard segments in the amorphous phase but also of the number of strained tie molecules.Herrn Dr. Dr. h. c. H. Hellmann zum 70. Geburtstag gewidmet.Part 3 cf. lit [11]     

聚酯-聚酯多嵌段共聚物的合成及其动态力学性能

聚酯-聚醚多嵌段共聚物的动态力学性能谱上有两个T_8,不宜做阻尼材料。本文报道聚对苯二甲酸乙二醇酯(PET)-端羟基聚己二酸乙二醇酯(PEA)共聚物(简称嵌段共聚酯),比聚醚-聚酯多嵌段共聚物有更好的相容性。我们研究了PEA的分子量,间苯二甲酸的用量对嵌段共聚酯的结晶度,以及结晶度对嵌段共聚酯的动态力学性能的影响。     

Thermal techniques to study complex elastomer/filler systems

The transfer of heat through an elastomeric matrix is important for both the processing of the material and its subsequent lifetime. Thermal conductivity can be used to evaluate the influence of different polymers and fillers on heat transfer. Additionally, the dispersion of the filler has an effect on heat transfer and thermal conductivity measurements can be used to provide semi-quantitative estimations of filler dispersion. The degradation of sulfur-crosslinked elastomer systems has been studied for many years. The degradation of the crosslinks (changes in sulfur rank) and degradation of the polymer backbone by thermal and/or oxidative processes have been studied extensively using many techniques including thermal analysis (references). However, the degradation of the crosslinked-polymer 'network' is less well understood. The relationship of the crosslink network to this degradation process is a key to both the long term and higher temperature performance of the sulfur-crosslinked elastomer. The changes in physical properties observed upon exposure of sulfur-crosslinked elastomers can be monitored using dynamic mechanical analysis. Subsequently, other thermal techniques can be used to monitor the chemistry that is occurring during these degradations. Thermal desorption/mass spectroscopy and dynamic scanning calorimetry are used to complete the picture of the degradation processes taking place. Examples of these techniques will be provided to illustrate the utility of the analytical approach, the chemistry involved in these degradation processes and the effect of changes in the polymer, cure package and other ingredients. This revised version was published online in August 2006 with corrections to the Cover Date.     

Thermal and Temporal Aging of Two Step Acid-Base Catalyzed Silica Gels in Water/Ethanol Solutions

Dissolution and reprecipitation of silica during aging in water improve the wet gels mechanical stiffness and strength, and hence shrinkage during supercritical drying is reduced. We have investigated how the strength and stiffness of a 2-step TEOS acid-base catalyzed wet gel can be improved by aging in a solution of water/ethanol (20–40 vol%) at various temperatures (20–70°C) and time (2 h and 24 h) and how this influences the aerogels properties. The linear shrinkage during supercritical drying was reduced from 29% to 2% by introducing the aging step in the 20 vol% water/ethanol solution for 24 h at 60°C.We have also in previous works introduced the idea of preparing ambient pressure dried silica aerogels by increasing the wet gels stiffness by aging in a TEOS solution until shrinkage during drying is almost eliminated. The gels aged in the water/ethanol solutions were further aged in a TEOS/ethanol solution and the effect of the increasing water content in the pore liquid was studied. A xerogel density of 0.20 g/cm³ is reported for gels with a shear modulus (G) of 30 MPa.     

Mechanical properties and transition temperatures of crosslinked-oriented gelatin

 This second part of a systematic study of the properties of crosslinked-oriented gelatin involves the effects of orientation and water content on the glass transition temperature T _g and on the melting behavior. The samples were the same as those in the preceding study, and their transition temperatures were determined by both differential scanning calorimetry and dynamic mechanical thermal analysis. The crosslinked gelatin which had been room-conditioned showed two transition temperatures: the lower one was attributed to T _g of the water-plasticized gelatin, and the higher one was interpreted as T _g of dried gelatin superimposed by melting. A rather unusual situation arose because of the fact that the T _g and melting temperatures T _m (217 and 230 ^°C, respectively) are so similar. Using water as plasticizer not only decreases T _g but produces imperfect crystallites which melt below the T _g of the system. The presence of the amorphous phase in the glassy state would presumably make it essentially impossible to define a melting point or crystallization temperature in the normal manner, as an equilibrium between crystalline and amorphous phases. Received: 8 October 1996 Accepted: 2 November 1995     

1,2-丁二醇共聚对聚对苯二甲酸乙二醇酯结晶行为及力学性能的影响

为了探索生物基乙二醇中的1,2-丁二醇(1,2-BDO)作为共聚单体对生物基聚对苯二甲酸乙二醇酯(PET)的结晶行为和力学性能的影响。 本文合成了生物基PET均聚物和不同1,2-BDO共聚单元摩尔分数的系列生物基PET共聚物(共聚单体摩尔分数分别为2.0%、2.7%和5.6%),并采用傅里叶变换红外光谱仪(FTIR)、差示扫描量热仪(DSC)和力学测试等技术手段研究了其结晶行为和力学性能。 结果表明,随着1,2-BDO共聚单元摩尔分数的增加,PET共聚物的熔融温度、结晶速率及结晶度均明显降低,表明1,2-BDO共聚单体的引入破坏了PET分子链的规整性,阻碍了PET链段的结晶。 PET材料的拉伸强度随着1,2-BDO共聚单元摩尔分数的增加而降低,而弯曲强度和弯曲模量略有升高。     

HIPS／PP熔融反应共混及其动态力学性质

研究了高抗冲聚苯乙烯（HIPS）／聚丙烯（PP）共混物在过氧化二异丙苯（DCP）存在下的熔融反应过程及其动态力学性质．HIPS在DCP存在下以聚苯乙烯（PS）的降解为主，伴随着聚丁二烯（PB）的交联和接枝，PP在DCP存在下以降解为主，HIPS／PP在DCP存在下以PP同HIPS的反应接枝为主，这种原位生成的增容剂显著地改善了HIPS／PP两组份间的相容性，其分子运动特征较前两者发生明显变化，PS的Tg下降，PB和PP的Tg升高．