Solvent intercalation in cobalt dimethylglyoximato complexes: A miniature host-guest system

When crystallized from appropriate solvents, the complex aqua-bis(dimethylglyoximato)nitrocobalt (III) may incorporate solvent molecules, thus forming a variety of mixed crystals. In the resulting host-guest crystals, the space groupP2_l/m and the packing motif of the pure host compound are retained. Lattice constantsa andb remain essentially unaltered upon intercalation, whereasc and the monoclinic angle depend largely on the clathrated guest. Space filling and intermolecular contacts are discussed.Dedicated to Professor Peter Paetzold at the occasion of his 60th birthday. A preliminary account of this work has been given at the Spring Meeting of the British Crystallographic Association, Newcastle upon Tyne, 1994.     

Clustering of nucleosides in the presence of alkali metals: Biologically relevant quartets of guanosine,deoxyguanosine and uridine observed by ESI-MS/MS

Electrospray ionization (ESI) mass spectra of nucleosides, recorded in the presence of alkali metals, display alkali metal ion-bound quartets and other clusters that may have implications for understanding non-covalent interactions in DNA and RNA. The tetramers of guanosine and deoxyguanosine and also their metaclusters (clusters of clusters), cationized by alkali metals, were observed as unusually abundant magic number clusters. The observation of these species in the gas phase parallels previous condensed-phase studies, which show that guanine derivatives can form quartets and metaclusters of quartets in solution in the presence of metal cations. This parallel behavior and also internal evidence suggest that bonding in the guanosine tetramers involves the bases rather than the sugar units. The nucleobases thymine and uracil are known to form magic number pentameric adducts with K+, Cs+ and NH4+ in the gas phase. In sharp contrast, we now show that the nucleosides uridine and deoxythymidine do not form the pentameric clusters characteristic of the corresponding bases. More subtle effects of the sugars are evident in the fact that adenosine and cytidine form numerous higher order clusters with alkali metals, whereas deoxyadenosine and deoxycytidine show no clustering. It is suggested that hydrogen bonding between the bases in the tetramers of dG and rG are the dominant interactions in the clusters, hence changing the ribose group to deoxyribose (and vice versa) generally has little effect. However, the additional hydroxyl group of RNA nucleosides enhances the non-selective formation of higher-order aggregates for adenosine and cytidine and results in the lack of highly stable magic number clusters. Some clusters are the result of aggregation in the course of ionization (ESI) whereas others appear to be intrinsic to the solution being examined.     

Computed Potential Energy Surfaces and Minimum Energy Pathways for Chemical Reactions

Computed potential energy surfaces are often required for computation of such observables as rate constants as a function of temperature, product branching ratios, and other detailed properties. We have found that computation of the stationary points/reaction pathways using CASSCF/derivative methods, followed by use of the internally contracted CI method with the Dunning correlation consistent basis sets to obtain accurate energetics, gives useful results for a number of chemically important systems. Applications to complex reactions leading to NO_x and soot formation in hydrocarbon combustion are discussed.     

铝交联皂石的合成和表征及催化性能

用XRD、化学分析、IR、MASNMR、TPD等手段表征了合成皂石及其铝交联物的结构。结果表明:皂石的交联密度与四面体层电荷和交联条件(Al/土比)有关。在乙醇氨化反应中,交联皂石显示了较好的催化活性和选择性。皂石的交联密度与液相产物分布的关系表明层柱材料对此反应具有择形催化作用。醇氨化反应可能是在吸附态NH_3和气相醇分子间进行的。     

生物体系中电子转移机理的研究Ⅱ: 分子间电子转移及 电子供、受体间不同基 团的影响

利用自编程序MOPAC-ET中AM1方法,及KT(Koopman'sTheorem)法,研究了二苯负离子体系的分子间电子转移现象,计算了其电子供、受体在不同距离下的V~A~B及它们之间的相关性,另外,还对两苯环间不同介入基团对电子转移的影响做了初步研究,发现不同的介入基团存在着较大的差异。     

Orbital Energy Order and the Through Bond Interaction in Homonuclear Diatomic Molecules

The homonuclear diatomic molecules are the simplest systems having both the σ framework and the lone pair orbitals n_a and _b for investigating their through space and through bond interaction. The striking orbital energy order n_g～ n_a+ n_b > n_n ～ n_a - n_b has been accounted for by the through bond interaction. However, when the p-content in the lone pair orbitals n_a and n_b decreases, one may have the reverse orbital energy order: n_g < n_g. A reverse orbital energy order has been found in F₂ and Cl₂, whose n_a and n_b are almost pure s-type atomic orbitals. The reverse order also occurs in molecule N₂ when the internuclear distance is larger man 1.5 Å. It is also found that the detail through space and through bond interaction and the eventual orbital energy order for n_g and n_u can be accounted for by the Fock operator within the localized molecular orbital space.     

Mechanism and control of molecular energy flow: a modeling perspective

 Vibrational energy flow in organic molecules occurs by a multiple-time-scale mechanism that can be modeled by a single exponential only in its initial stages. The mechanism is a consequence of the hierarchical structure of the vibrational Hamiltonian, which leads to diffusion of vibrational wavepackets on a manifold with far fewer than the 3N−6 dimensions of the full vibrational state space. The dynamics are controlled by a local density of states, which does not keep increasing with molecular size. In addition, the number of vibrational coordinates severely perturbed during chemical reaction is small, leading to preservation of the hierarchical structure at chemically interesting energies. This regularity opens up the possibility of controlling chemical reactions by controlling the vibrational energy flow. Computationally, laser control of intramolecular vibrational energy redistribution can be modeled by quantum-classical, or by purely quantum-mechanical models of the molecule and control field. Received: 26 July 2002 / Accepted: 30 September 2002 / Published online: 2 December 2002 Electronic Supplementary Material to this paper can be obtained by using the Springer Link server located at http://dx.doi.org/10.1007/s00214-002-0394-2. Acknowledgements. This work was supported by NSF grant CHE 9986670. Correspondence to: M. Gruebele e-mail: gruebele@scs.uiuc.edu     

Ab initio through‐space/bond interaction analysis of the long C–C bonds in Bi(anthracene‐9,10‐dimethylene) photoisomers

The bi(anthracene‐9,10‐dimethylene) photoisomer has remarkably long C–C single bonds. To examine the lengthening of the C–C bond, we propose a novel procedure for quantitatively analyzing orbital interactions in a molecule at the level of the ab initio molecular orbital method. In this procedure, we can cut off the specific through‐space/bond interactions in a molecule by artificially increasing the absolute magnitude of the exponents in a Gaussian function. Then, the spatial orbital interactions were perfectly cut off, and, each term that makes up the total energy, that is, the nuclear–electron attractions, the electron–electron repulsions, and the nuclear–nuclear repulsions cancel each other. Several model molecules of the photoisomer were analyzed by this procedure. It was found that the orbital interaction between the p orbital on the benzene ring and the σ* orbital on the C–C bond in question, σ→σ* electron transfer through π orbital, weakens the C–C bond efficiently when these orbitals were located in the “periplanar” conformation. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Hydrogen Effect on Coke Removal and Catalytic Performance in Pre-Carburization and Methane Dehydro-Aromatization Reaction on Mo/HZSM-5

1. Introduction As an effective utilization of methane, the methane dehydro-aromatization was focused in the last decade [1-28]. Over the Mo/HZSM-5 bi- functional catalyst at high reaction temperature, methane can be converted into light aromatics (ben- zene and naphthalene) and hydrogen. Mo active species can activate the C—H bond of methane; and HZSM-5 supplies the acid sites for the oligomeriza- tion and cyclization of hydrocarbons to form aromat- ics, and suppresses the deeper condens…     

Quantized Hamilton Dynamics

The paper describes the quantized Hamilton dynamics (QHD) approach that extends classical Hamiltonian dynamics and captures quantum effects, such as zero point energy, tunneling, decoherence, branching, and state-specific dynamics. The approximations are made by closures of the hierarchy of Heisenberg equations for quantum observables with the higher order observables decomposed into products of the lower order ones. The technique is applied to the vibrational energy exchange in a water molecule, the tunneling escape from a metastable state, the double-slit interference, the population transfer, dephasing and vibrational coherence transfer in a two-level system coupled to a phonon, and the scattering of a light particle off a surface phonon, where QHD is coupled to quantum mechanics in the Schrödinger representation. Generation of thermal ensembles in the extended space of QHD variables is discussed. QHD reduces to classical mechanics at the first order, closely resembles classical mechanics at the higher orders, and requires little computational effort, providing an efficient tool for treatment of the quantum effects in large systems.