Correlations between topological features and physicochemical properties of molecules

The article reviews in brief, thede novo group additivity approach and, at length, the different topological approaches to obtain predictive and internally consistent correlations between various properties and structural features of molecules. The stress has mainly been on the molecular connectivity method. A new rational scheme for nomenclature of connectivity indices of different orders and types is introduced. The concept of the perturbation connectivity parameter developed by us recently has been applied to obtain correlations for molar refraction, boiling point, molar volume, heat of atomisation, heat of combustion, heat of vaporisation, magnetic susceptibility and critical constants of alkanes, alcohols and alkylbenzenes. A comparative study of various approaches reveals that the present perturbation topological approach has an edge over other similar methods.     

Gas chromatographic — Mass spectrometric identification of alkylcyclohexanes and cyclohexenes

Summary A series of 34 alkylcyclohexane hydrocarbons structurally related top-menthane, including all saturated, monoolefinic and aromatic structural precursors from cyclohexane, have been characterized by GC and MS. Kováts retention indices have been determined on five stationary phases (squalane, SE-30, Apiezon L, OV-225, PEG 20M) and the corresponding polarity, temperature and structural increments have been calculated. From the information acquired 10 alicyclic hydrocarbons have been identified for the first time in a pyrolysis naphtha.     

New indices for analysing partial ranking diagrams

Interest is growing in decision making strategies and several techniques are now available. The assessment of priorities is a typical premise before final decisions are taken. Total and partial order ranking (POR) strategies, which from a mathematical point of view are based on elementary methods of discrete mathematics, appear as an attractive and simple tool to asses priorities. Despite the well-known total ranking strategies, which are scalar methods combining the different criteria values into a global index which always ranks elements in an ordered sequence, the partial order ranking is a vectorial approach which recognises that not all the elements can be directly compared with all the others. In fact when many criteria are considered, contradictions in the ranking are bound to exist and the higher the number of criteria, the higher the probability that contradictions in the ranking occur. The Hasse diagram technique (HDT) is a very useful tool to perform partial order ranking. The results of the partial order ranking are visualised in a diagram, called Hasse diagram. Incomparable elements are located at the same geometrical height and as high as possible in the diagram, thus incomparable elements are arranged in levels. The quality of a ranking procedure has to be evaluated by a deep analysis and by several indices, i.e. scalar functions that describe features of an ordered set and allow comparison among different rankings. For this purpose, new indices for ranking analysis are proposed here, compared with the ones found in literature and tested on theoretical examples and on real data.     

基于分子参数的药物小肠吸收预测模型

选择100个化合物作为数据集,随机选取其中80个为训练集,其他分子为验证集,并为每个化合物分子计算了30个参数.通过采用五种不同多元线性回归分析方法对其训练模拟,建立了数学模型,并用验证集检验了所建模型的预测能力.结果发现向后筛选法为最优小肠吸收建模方法.由该法所建模型的统计结果良好(R2>0.80),应用于验证集时也表现出较强预测能力.该模型确定了对小肠吸收影响较大的分子参数,有助于指导进一步的新药筛选和开发.     

Matrix effects and selectivity issues in LC-MS-MS

Summary Chlorobenzenes, triazine and phenylurea herbicides were separated by normal micellar electrokinetic chromatography (MEKC) and by micellar electrokinetic chromatography with reversed flow (RF-MEKC) in running buffers containing organic solvents. The relationship between the two techniques is similar to that between reversed-phase and normal-phase HPLC. Using RF-MEKC, the separation of lipophilic compounds is often improved compared to normal MEKC. The migration in MEKC and in RF-MEKC was characterised by lipophilic and polar indices. The experimental values of the lipophilic indices of the compounds tested in the two techniques were close to the indices in reversed-phase HPLC (RP-HPLC). This enables the use of the indices determined in RP-HPLC for predicting the effects of changing composition of the running buffers on migration times in MEKC and in RF-MEKC. Presented at Balaton Symposium '01 on High-Performance Separation Methods, siófok, Hungary, September 2–4, 2001     

拓扑指数法研究稀土显色剂结构与铈显色反应对比度的关系

计算了４３种不对称变色酸双偶氮膦酸型显色剂的Ａｍ拓扑指数，并将其与结构选择性因子相结合，用于偶氮类显色剂结构与铈显色反应对比度的相关性研究，讨论了显色剂结构对拓扑指数有译比度的影响。     

Molecular electrostatic potentials as input for the alignment of HIV-1 integrase inhibitors in 3D QSAR

Comparative molecular similarity indices analysis (CoMSIA), a three-dimensional quantitative structure activity relationship (3D QSAR) paradigm, was used to examine the correlations between the calculated physicochemical properties and the in vitro activities (3'-processing and 3'-strand transfer inhibition) of a series of human immunodeficiency virus type 1 (HIV-1) integrase inhibitors. The training set consisted of 34 molecules from five structurally diverse classes: salicylpyrazolinones, dioxepinones, coumarins, quinones, and benzoic hydrazides. The data set was aligned using extrema of molecular electrostatic potentials (MEPs). The predictive ability of the resultant model was evaluated using a test set comprised of 7 molecules belonging to a different structural class of thiazepinediones. A CoMSIA model using an MEP-based alignment showed considerable internal as well external predictive ability (r2(cv) = 0.821, r2(pred) = 0.608 for 3'-processing; and r2(cv) = 0.759, r2(pred.) = 0.660 for 3'-strand transfer).     

Using new structurally related additive schemes in the precalculation of gas chromatographic retention indices of polychlorinated hydroxybiphenyls on HP-5 stationary phase

A new additive scheme is proposed for the precalculation of gas chromatographic retention indices of complex organic compounds. The principal feature of this approach is the absence of previously calculated I increments for any structural fragments or functional groups in the molecule. Instead, arithmetical operations involving I values of simpler structural analogues of target compounds are used directly. I precalculation for polychlorinated hydroxybiphenyls (839 congeners) on the HP-5 stationary phase was chosen as one of the most important applications of the method under discussion. Such a large number of congeners cannot be obtained as reference samples and their gas chromatographic (GC)-mass spectrometric (MS) identification should therefore be based currently on precalculated I values.     

Stereoanalysis of fullerenes with a chiral molecular framework

Stereoanalysis of three fullerene molecules with a chiral molecular framework C₃₂, C₇₆, and C₇₈ and achiral fullerene C₆₀ molecule was carried out. Comparative quantitative analysis of the degree of chirality showed topology to be the major factor governing the chirality of fullerenes. A procedure for determining the relative contribution of topological chirality to the total chirality of the molecule is proposed. Structural fragments responsible for chirality are found. The title fullerenes are assigned to the corresponding subclasses of homochirality. A classification system of isomeric fullerenes is proposed.     

Multidimensional separation of isomeric species of chlorinated hydrocarbons such as PCB,PCDD, and PCDF

A multidimensional GC-system containing two capillary columns of different polarities, operated within a double oven instrument, was used for the optimized separation of complex isomeric mixtures of various types of chlorinated aromatic compounds such as PCB, PCDD, or PCDF. Electron capture was applied parallel to flame ionization detection to obtain sensitive signals of the PCB or PCDD and the n-alkane standards required for identification by Kovats indices, respectively. Electron capture detection within a valvelessly operated MDGC system forced changes in the usual instrumental set-up, the live-switching coupling piece being located within the second oven of the double oven instrument. This oven is operated isothermally to ensure optimal and interference-free detection, for stable flow conditions within the coupling piece and for the determination of the isothermal retention indices (Kovats), which are much more suitable for identification by retention than the so-called “linear” indices.