离心泵性能测定远程实验系统的开发与设计

开发了一套基于计算机网络的离心泵性能测定远程实验系统,介绍了该远程实验系统的总体结构、软件功能、运行方法及安全设计等。测试结果表明,该远程实验系统满足离心泵性能测定实验的教学目的,具有很强的现场感、操作简单等特点。     

浮筒式液面调节器设计

该文设计了一种新型的液面调节器：对浮筒式液面调节器的原理和结构进行了设计，并对调节器的技术指标和调节方法做了阐述，经实际使用证明，该调节器对液面调节与控制效果良好。     

Tunable Probes with Direct Fluorescence Signals for the Constitutive and Immunoproteasome

Electrophiles are commonly used for the inhibition of proteases. Notably, inhibitors of the proteasome, a central determinant of cellular survival and a target of several FDA‐approved drugs, are mainly characterized by the reactivity of their electrophilic head groups. We aimed to tune the inhibitory strength of peptidic sulfonate esters by varying the leaving groups. Indeed, proteasome inhibition correlated well with the pK_a of the leaving group. The use of fluorophores as leaving groups enabled us to design probes that release a stoichiometric fluorescence signal upon reaction, thereby directly linking proteasome inactivation to the readout. This principle could be applicable to other sulfonyl fluoride based inhibitors and allows the design of sensitive probes for enzymatic studies.     

Fast and flexible gpu accelerated binding free energy calculations within the amber molecular dynamics package

Alchemical free energy (AFE) calculations based on molecular dynamics (MD) simulations are key tools in both improving our understanding of a wide variety of biological processes and accelerating the design and optimization of therapeutics for numerous diseases. Computing power and theory have, however, long been insufficient to enable AFE calculations to be routinely applied in early stage drug discovery. One of the major difficulties in performing AFE calculations is the length of time required for calculations to converge to an ensemble average. CPU implementations of MD‐based free energy algorithms can effectively only reach tens of nanoseconds per day for systems on the order of 50,000 atoms, even running on massively parallel supercomputers. Therefore, converged free energy calculations on large numbers of potential lead compounds are often untenable, preventing researchers from gaining crucial insight into molecular recognition, potential druggability and other crucial areas of interest. Graphics Processing Units (GPUs) can help address this. We present here a seamless GPU implementation, within the PMEMD module of the AMBER molecular dynamics package, of thermodynamic integration (TI) capable of reaching speeds of >140 ns/day for a 44,907‐atom system, with accuracy equivalent to the existing CPU implementation in AMBER. The implementation described here is currently part of the AMBER 18 beta code and will be an integral part of the upcoming version 18 release of AMBER. © 2018 Wiley Periodicals, Inc.     

针对连续变化法测定络合物稳定常数实验中可能出现的设计缺陷的讨论

连续变化法测定络合物组成和稳定常数是大学化学中的经典学生实验。但针对1：2和1：3的络合反应，实验教科书的设计中可能出现数据点过少也就是溶液配制过少的问题。如果按照要求配制溶液，由于没有完全反应的混合溶液，而其他混合溶液给出的数据又都呈良好的线性，就缺少了用来估算曲线的数据点，结果是，将没有足够的数据对稳定常数进行估算。对这种可能出现的数据点过少的实验设计的原因、结果和解决方法进行了探讨。     

Controlled evaporative self-assembly of polymer nanoribbons using oscillating capillary bridges

Evaporative self-assembly (ESA), based on the “coffee-ring” effect, is a versatile technique for assembling particle solutions into mesoscale patterns and structures on different substrates. ESA works with a wide variety of organic and inorganic materials, where the solution is a combination of volatile solvent and nonvolatile solute. Modified ESA methods, such as “stop-and-go flow coating,” use a programmed meniscus “stick–slip” motion to create mesoscale assemblies with controlled shape, size, and architecture. However, current methods are not scalable for increased production volumes or patterning large surface areas. We demonstrate a new ESA method, where an oscillating blade controls the meniscus depinning and drives the evaporative assembly of solutes at the pinned meniscus. Results show that oscillation frequency and substrate speed control time/distance intervals between successive meniscus depinning, and the assembly dimensions depend on solution concentration, oscillation frequency, substrate speed, and meniscus height. We report the mechanism of the meniscus depinning and the control over assembly cross-sectional dimensions. This advance provides a scalable ESA method with faster processing times and maintained advantages. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2018 , 56, 1545–1551     

Stereopositional Outcome in the Packing of Dissimilar Aromatics in Designed β‐Hairpins

A popular strategy in the de novo design of stable β‐sheet structures for various biomedical applications is the incorporation of aromatic pairs at the non‐hydrogen‐bonding (NHB) position. However, it is important to explicitly understand how aryl pair packing at the NHB region is coordinated with backbone structural rearrangements, and to delineate the benefits and drawbacks associated with stereopositional choice of dissimilar aromatic pairs. Here, we probe the consequences of flipped Trp/Tyr pairs by using engineered permutants at the NHB position of dodecapeptide β‐hairpins, proximal and distal to the turn. Extensive conformational analysis of these peptides using NMR and CD spectroscopy reveal that a classic Edge‐to‐Face and Face‐to‐Edge geometry at the proximal and distal aromatic pairs, respectively, in YW‐WY, is the most stabilizing. Such a preferred packing geometry in YW‐WY results in a highly twisted β‐sheet backbone, with Trp always providing a ‘Face’ orientation to its dissimilar aromatic partner Tyr. Flipping the proximal and/or distal aromatic pair distorts the ideal T‐shaped geometry, and results in alternate aryl arrangements that can adversely affect strand twist and β‐sheet stability. Our study reveals the existence of a strong stereopositional influence on the packing of dissimilar aromatic pairs. Our findings highlight the importance of modeling physical interaction forces while designing protein and peptide structures for functional applications.     

Exploratory Analysis for Elemental Characterization of Biomass Residues From Biodiesel Production by Inductively Coupled Plasma Optical Emission Spectrometry

Edible and non-edible seeds with high oil content are used as the main raw material for biodiesel production. The residual biomass (press cake or oil cake) can be used as animal feed, to aggregate value to the biodiesel production cycle. In this work, a microwave-assisted-digestion procedure for elementary determination by inductively coupled plasma optical emission spectrometry (ICP OES) using dilute nitric acid was developed. Inter-laboratorial reference material was used to check the accuracy. A full factorial design in addition to exploratory analysis through principal component analysis (PCA) and hierarchical cluster analysis (HCA) were used to classify the samples: press cakes from castor (Ricinus communis), jatropha (Jatropha curcas), radish (Raphanus sativus), sunflower (Heliantus annus), and coffee (Coffe arabica), according to their similarities.     

Effects of silica nanoparticle addition on polymer semiconductor wettability and carrier mobility in solution‐processable organic transistors on hydrophobic substrates

The effects of the addition of silica nanoparticles (SNPs) on wettability of regioregular poly(3‐hexylthiophene) (P3HT) organic semiconductor solutions on hydrophobic substrates and the carrier mobility in organic field‐effect transistors (OFETs) made of these films are investigated. The dewetting of films made from P3HT solutions on hydrophobic substrates modified with octadecyltrichlorosilane (ODTS) is markedly suppressed after the addition of SNPs with phenyl surfactants. This enables us to fabricate continuous P3HT/SNPs films with high crystallinity by the conventional spin‐coating technique, leading to higher mobility compared with P3HT FETs fabricated on non‐modified substrates. Moreover, the addition of SNPs with larger diameters compensates for the degradation of mobility associated with the increase in the concentration of SNPs. Solution‐processed P3HT/SNPs FETs on ODTS‐modified substrates exhibit a field‐effect mobility of 1.3 × 10^?2 cm² V^?1 s^?1, which is almost comparable to that of P3HT FETs without SNPs (2.1 × 10^?2 cm² V^?1 s^?1). © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 509–516