H-ZSM-5分子筛不同孔道处的酸位在甲醇制烯烃反应中的催化作用

甲醇制烯烃(MTO)作为一条由煤、天然气和生物质等含碳资源制备重要有机化学品的非石油路线,近年来备受关注.作为MTO催化剂,分子筛的骨架拓扑结构和酸性质对于其催化活性、反应路径和产物分布等具有重要的影响.H-ZSM-5分子筛是一种典型的MTO反应催化剂,酸位可以分布在MFI拓扑结构的直孔道、正弦孔道和交叉位点处.虽然目...     

Study of Endogen Substrates,Drug Substrates and Inhibitors Binding Conformations on MRP4 and Its Variants by Molecular Docking and Molecular Dynamics

Multidrug resistance protein-4 (MRP4) belongs to the ABC transporter superfamily and promotes the transport of xenobiotics including drugs. A non-synonymous single nucleotide polymorphisms (nsSNPs) in the ABCC4 gene can promote changes in the structure and function of MRP4. In this work, the interaction of certain endogen substrates, drug substrates, and inhibitors with wild type-MRP4 (WT-MRP4) and its variants G187W and Y556C were studied to determine differences in the intermolecular interactions and affinity related to SNPs using protein threading modeling, molecular docking, all-atom, coarse grained, and umbrella sampling molecular dynamics simulations (AA-MDS and CG-MDS, respectively). The results showed that the three MRP4 structures had significantly different conformations at given sites, leading to differences in the docking scores (DS) and binding sites of three different groups of molecules. Folic acid (FA) had the highest variation in DS on G187W concerning WT-MRP4. WT-MRP4, G187W, Y556C, and FA had different conformations through 25 ns AA-MD. Umbrella sampling simulations indicated that the Y556C-FA complex was the most stable one with or without ATP. In Y556C, the cyclic adenosine monophosphate (cAMP) and ceefourin-1 binding sites are located out of the entrance of the inner cavity, which suggests that both cAMP and ceefourin-1 may not be transported. The binding site for cAMP and ceefourin-1 is quite similar and the affinity (binding energy) of ceefourin-1 to WT-MRP4, G187W, and Y556C is greater than the affinity of cAMP, which may suggest that ceefourin-1 works as a competitive inhibitor. In conclusion, the nsSNPs G187W and Y556C lead to changes in protein conformation, which modifies the ligand binding site, DS, and binding energy.     

Probing the Role of the Conserved Arg174 in Formate Dehydrogenase by Chemical Modification and Site-Directed Mutagenesis

The reactive adenosine derivative, adenosine 5′-O-[S-(4-hydroxy-2,3-dioxobutyl)]-thiophosphate (AMPS-HDB), contains a dicarbonyl group linked to the purine nucleotide at a position equivalent to the pyrophosphate region of NAD⁺. AMPS-HDB was used as a chemical label towards Candida boidinii formate dehydrogenase (CbFDH). AMPS-HDB reacts covalently with CbFDH, leading to complete inactivation of the enzyme activity. The inactivation kinetics of CbFDH fit the Kitz and Wilson model for time-dependent, irreversible inhibition (K_D = 0.66 ± 0.15 mM, first order maximum rate constant k₃ = 0.198 ± 0.06 min⁻¹). NAD⁺ and NADH protects CbFDH from inactivation by AMPS-HDB, showing the specificity of the reaction. Molecular modelling studies revealed Arg174 as a candidate residue able to be modified by the dicarbonyl group of AMPS-HDB. Arg174 is a strictly conserved residue among FDHs and is located at the Rossmann fold, the common mononucleotide-binding motif of dehydrogenases. Arg174 was replaced by Asn, using site-directed mutagenesis. The mutant enzyme CbFDHArg174Asn was showed to be resistant to inactivation by AMPS-HDB, confirming that the guanidinium group of Arg174 is the target for AMPS-HDB. The CbFDHArg174Asn mutant enzyme exhibited substantial reduced affinity for NAD⁺ and lower thermostability. The results of the study underline the pivotal and multifunctional role of Arg174 in catalysis, coenzyme binding and structural stability of CbFDH.     

FER分子筛中铝原子的受限落位

分子筛是一类具有规则孔道或笼状结构的多孔材料,因其独特的结构和可调的酸性而广泛用于石油化工、精细化学品合成、现代煤化工等诸多行业.2006年Iglesia等在具有8元环孔道结构/侧口袋的FER和MOR分子筛上实现了无卤素添加、无贵金属存在条件下,由二甲醚羰基化合成乙酸甲酯的反应.乙酸甲酯通过进一步加氢可实现煤基乙醇的绿色生产.MOR分子筛通常具有较高的催化活性,但失活迅速;FER分子筛表现出良好的催化稳定性,但活性较低.如何在保证FER分子筛稳定性的前提下,进一步提升其羰基化活性是目前研究的热点.前期理论和实验研究发现,二甲醚羰基化反应活性与分子筛8元环孔道中的Br?nsted酸位密度存在正相关.因此,通过优化合成条件,选择性调控铝原子分布在"ferrierite"笼中,可以提高FER分子筛的羰基化反应活性.尽管研究者已在调节FER分子筛铝分布方面进行了大量研究,但对于不同T位上Al原子的精准识别以及对应Br?nsted酸位的可接触性还缺少系统和深入的认识.本文选取了几种代表性模板剂,分别在碱性和含氟体系下制备了系列FER分子筛样品,利用Rietveld精修和模拟退火算法,在原子水平揭示了模板剂种类以及合成介质变化对Al原子在不同T位分布的影响,并结合二甲醚羰基化反应进行了结构和性能的关联.首先选取不同尺寸大小的环状胺(环己胺、哌啶、吡啶、吡咯烷)和链状胺(乙二胺)合成了具有相似形貌、孔结构、酸密度的系列FER分子筛样品.以CHA-Na-FER为例,PXRD精修结果显示,Na+(平衡35％的骨架负电荷)分布在10元环孔道中与O1形成氢键,质子化的环己胺分布在"ferrierite"笼中,并且环己胺上的N与O3形成氢键.这说明与O1相连的T3位以及与O3相连的T1位都有可能是Al富集的位置.为了进一步验证该结论,本文还精修了吸附探针分子吡啶的样品CHA-Na-FER-Py-60h.原粉以及吸附吡啶样品的精修结果表明,T1位和T3位是样品中铝富集的位置.随后,运用相同方法研究了Py-Na-FER,PI-Na-FER,En-Na-FER和Pyrr-HF-FER样品中的Al落位,发现T1/T3位均是样品中Al富集的位置.此外,理论计算结果表明T1/T3位上Al原子的取代能较低,说明Al优先取代T1/T3位上的Si,这与精修结果相一致.前期理论模拟结果表明,FER分子筛中T2-O5和T4-O7位点的CO插入反应能垒较低,是二甲醚羰基化反应的活性位.本文吡啶吸附实验、热重分析以及PXRD精修结果表明,FER分子筛中大部分Al富集在T1/T3位,与T2/T4位相关的Br?nsted酸约占18％～30％.最后,对各样品进行了二甲醚羰基化反应评价,结果显示PI-Na-FER,Py-Na-FER,En-Na-FER和CHA-Na-FER催化剂的乙酸甲酯生成速率相近,约为0.10 mol/(mol H+?h).Pyrr-HF-FER催化剂的乙酸甲酯生成速率最高,可达到0.16 mol/(mol H+?h),这可能是由于Pyrr-HF-FER催化剂具有更多T2/T4位相关的Br?nsted酸.虽然Pyrr-HF-FER催化剂的乙酸甲酯生成速率较其他四个催化剂有一定提升,但其仍远低于MOR分子筛上乙酸甲酯生成速率(0.40 mol/(mol H+·h)).综上,有机模板剂的选择与合成介质的改变对FER分子筛中Al分布的调控作用是有限的,即Al原子总是优先分布于T1/T3位.而与T1和T3位相关的Br?nsted酸位不是二甲醚羰基化反应的活性位点.因此与MOR相比,FER分子筛在二甲醚羰基化反应中表现出较低的催化活性.     

MoO3和Nb2O5助剂对Pt/ZrO2催化剂上短链烷烃燃烧反应的不同促进作用

贵金属Pt催化剂具有高活性和热稳定性,广泛应用于催化挥发性有机物的完全氧化反应(燃烧反应).短链烷烃(甲烷、乙烷、丙烷等)化学性质稳定,是最难氧化的一类有机物,常用作考察燃烧反应催化剂性能的模型反应物.然而,目前报道的研究工作通常仅限于针对某一种烷烃底物的催化燃烧,系统考察催化剂以及助剂对不同短链烷烃的催化燃烧活性鲜有报道.在短链烷烃中,甲烷只有C–H键;而其它烷烃除了C–H键;还有C–C键.因此,研究催化剂对甲烷、乙烷和丙烷燃烧反应催化性能的差异性,对于认识催化剂上C–H键和C–C键的活化具有非常重要的意义.本文制备了MoO3或Nb2O5修饰的Pt/ZrO2催化剂并用于短链烷烃的燃烧反应.研究发现,MoO3助剂对甲烷燃烧有明显的抑制作用,但对乙烷,丙烷和正己烷燃烧反应具有促进作用,促进作用随着烷烃碳链的增长逐渐增加;Nb2O5助剂对甲烷、乙烷、丙烷和正己烷燃烧反应均具有促进作用,然而促进作用随着碳链的增长而逐渐减弱.MoO3和Nb2O5助剂的不同促进作用与助剂影响催化剂表面酸性以及Pt物种的氧化或还原态有关.NH3-TPD结果表明,MoO3助剂可以显著增加Pt/ZrO2催化剂表面强酸位点数量,而Nb2O5助剂可以显著增加Pt/ZrO2催化剂表面中强酸位点数量.HTEM结果表明,两种助剂的添加都不会明显改变Pt物种的颗粒尺寸.在Pt-Mo/ZrO2催化剂上,MoO3覆盖部分Pt物种形成丰富的Pt-MoO3界面,促进了金属Pt物种和强表面酸性位点的生成,提高了丙烷燃烧反应活性;Pt-Nb/ZrO2催化剂上载体表面的部分Nb2O5被Pt物种包覆,使得生成的表面Pt-Nb2O5界面低于Pt-Mo/ZrO2催化剂,但由于催化剂表面酸性位的提升,也促进了丙烷燃烧反应活性的提高.XPS结果表明,在甲烷燃烧反应中,Pt-Nb/ZrO2催化剂上Ptn+物种能够更加稳定地存在,这可能是Nb2O5助剂提高Pt-Nb/ZrO2催化剂上甲烷燃烧活性的关键.而Pt-Mo/ZrO2催化剂上Ptn+物种在甲烷反应中可以更容易地被还原,并且由于MoO3的包裹导致暴露的Pt位点数量降低,使催化剂催化甲烷燃烧的活性受到抑制.可见,MoO3助剂更有利于C–C键活化,而Nb2O5助剂更有利于高键能的C–H键活化.综上,本文系统性地研究MoO3助剂和Nb2O5助剂对Pt/ZrO2催化剂上不同短链烷烃的燃烧反应的影响,证实了两种助剂的促进作用与碳链长度的关系是截然不同的.     

HZSM-5分子筛中邻近酸中心上的协同催化作用

总结了HZSM-5分子筛中邻近的酸中心协同催化作用的研究进展, 包括布朗斯特酸(B酸)和路易斯酸 (L酸)的协同催化、 B酸和B酸的协同催化作用. 综述了通过多种表征手段下协同催化作用机理的研究进展, 以及实验与理论计算相结合并相互验证的研究结果, 对邻近酸中心协同作用下反应分子的共同吸附、 活化与转化路径的特点进行了分析与总结, 提出了对邻近酸中心协同催化作用进行深入研究的关键科学问题和可能的解决方案.     

Inhibition of two Cu(II) and Mn(II) coordination polymers on the surgical site infections by inhibiting the bacterial biofilm formation

Within this work, two novel Cu(II) and Mn(II)-based coordination polymers (CPs) along with chemical compositions of {[Cu₂(L¹)(1,4-NDC)₂]·3H₂O}_n (1, 1,4-H₂NDC = Naphthalene-1,4-dicarboxylic acid, L¹ ​= ​di(1H-imidazole-1-yl)methane) and [Mn₃(L²)₂(H₂O)₂(1,4-NDC)₂]_n (2, L² ​= ​1,4-di(1H-imidazole-1-yl)benzene) have been completed in success via related metal salts reaction with 1,4-H₂NDC ligand in existence of various N-donor co-ligands. We discovered its application values on the surgical site infections (SSI) along with corresponding mechanism in the interim. We evaluated inflammatory cytokines released into the urine through ELISA detection kit after compound treatment. Then, we discovered the inhibitory effect of compound on the bacterial biofilm formation via real time RT-PCR.     

When UDG and hAPE1 Meet Cyclopurines. How (5′R) and (5′S) 5′,8-Cyclo-2′-deoxyadenosine and 5′,8-Cyclo-2′-deoxyguanosine Affect UDG and hAPE1 Activity?

Ionizing radiation is a factor that seriously damages cellular mechanisms/macromolecules, e.g., by inducing damage in the human genome, such as 5′,8-cyclo-2′-deoxypurines (cdPus). CdPus may become a component of clustered DNA lesions (CDL), which are notably unfavorable for the base excision repair system (BER). In this study, the influence of 5′S and 5′R diastereomers of 5′,8-cyclo-2′-deoxyadenosine (cdA) and 5′,8-cyclo-2′-deoxyguanosine (cdG) on the uracil-DNA glycosylase (UDG) and human AP site endonuclease 1 (hAPE1) activity has been taken under consideration. Synthetic oligonucleotides containing 2′-deoxyuridine (dU) and cdPu were used as a model of single-stranded CDL. The activity of the UDG and hAPE1 enzymes decreased in the presence of RcdG compared to ScdG. Contrary to the above, ScdA reduced enzyme activity more than RcdA. The presented results show the influence of cdPus lesions located within CDL on the activity of the initial stages of BER dependently on their position toward dU. Numerous studies have shown the biological importance of cdPus (e.g., as a risk of carcinogenesis). Due to that, it is important to understand how to recognize and eliminate this type of DNA damage from the genome.     

Reaction mechanism of hydrogen cyanide catalyzed by gas‐phase titanium

To explore the details of the reaction mechanism of Ti atom with HCN, the reactive site and reactivity have been predicted first, the potential energy surfaces have been systematically studied at different theoretical levels. Four different reaction pathways and product distribution are discussed by means of the activation strain model and Curtin–Hammett principle. In addition, the structures, bonding properties and the frontier molecular orbital interaction diagrams of main stationary points were analyzed by atoms in molecules and natural bond orbital. The results show that for this system, there are four reaction pathways, in which path b (HCN＋Ti→IM1→TS1→IM2→T2b→IM4) is the most favorable pathway.     

硫氰根选择性吸附在g-C_3N_4/Ag表面增强其光催化制氢性能(英文)

作为一种无金属的新型半导体材料,g-C_3N_4因具有稳定的物理化学性质及合适的能带结构而引起人们的关注.理论上g-C_3N_4完全满足水分解的电势条件.然而研究发现,g-C_3N_4材料本身的光催化性能并不好,这主要是由于半导体材料被光激发后生成的自由电子和空穴还没来得及到达材料表面参与反应,就在材料体相内发生复合,导致电子参与有效光催化制氢反应的几率大大降低.同时还发现,将少量的贵金属,如Pt,Au,Pd作助催化剂修饰在该半导体表面,其光催化性能明显提高.但由于这些贵金属储量非常稀少,价格昂贵,导致它们的使用受到一定限制.而Ag作为一种价格远低于Pt,Au,Pd的贵金属,也得到了广泛的研究.研究表明,金属Ag储存电子的能力很好,因此可以有效地将半导体上生成的光生电子快速转移到Ag上面去,从而达到电子空穴快速分离的目的.但是在光催化制氢过程中,Ag吸附H~+的能力较弱,致使电子与H~+反应的诱导力较弱,使得Ag释放电子的能力较差.因此可以通过提高Ag表面对H~+的吸附强度,以加速Ag的电子释放,通过表面修饰来提高Ag助剂的光催化活性.研究发现,Ag纳米粒子表面与含硫化合物之间存在很强的亲和力.硫氰根离子(SCN~–)具有很强的电负性,容易吸附溶液中H~+离子,并且也易吸附在Ag纳米粒子的表面.因此可以利用Ag与SCN~–的作用来增强Ag释放电子的能力.本文采用光还原法将Ag沉积在g-C_3N_4半导体材料表面,然后通过在制氢牺牲剂中加入KSCN溶液,利用SCN~-与Ag的亲和力来提高光生电子参与光催化反应的效率.结果表明,在SCN~-存在的情况下,g-C_3N_4/Ag的光催化制氢性能显著提高.当制氢溶液中SCN~–浓度为0.3 mmol L~(–1)时,材料的光催化制氢性能达最大,为3.89μmol h~(–1),比g-C_3N_4/Ag性能提高5.5倍.基于少量的SCN~–就能明显提高g-C_3N_4/Ag材料的光催化性能,我们提出了一个可能性的作用机理:金属银和SCN~-协同作用,即银纳米粒子作为光生电子的捕获和传输的一种有效的电子传递介质,而选择性吸附在银表面的SCN~-作为界面活性位点有效地吸附溶液中的质子以促进产氢反应,二者协同作用,加速了g-C_3N_4-Ag–SCN~-三物种界面之间电荷的传输、分离及界面催化反应速率,有效抑制了g-C_3N_4主体材料光生电子和空穴的复合,因而g-C_3N_4/Ag–SCN复合材料的光催化制氢性能提高.考虑到其成本低、效率高,SCN~–助催化剂有很大的潜力广泛应用于制备高性能的银修饰光催化材料.