Recent developments on creation of artificial metalloenzymes

Organic synthesis using biocatalysts has been developed over many years and is still a prominent area of research. In this context, various hybrid biocatalysts composed of a synthetic metal complex catalyst and a protein scaffold (i.e. “artificial metalloenzymes”) have been constructed. One of the most recent research areas in biocatalysts-mediated synthesis is CC bond/cleavage, the most important type of reaction in organic chemistry. Some of the artificial enzymes were applied to in-cell reactions as well as in vitro systems. The effects of the structural fluctuation in biomacromolecules on their functions have also been realized. This review article includes recent research examples of artificial metalloenzymes used to CC bond formation/cleavage. As a perspective, we also focus on how we apply protein dynamics factor for the creation of new generation artificial metalloenzymes.     

人工神经元网络辅助丙烷氨氧化催化剂设计

报道了利用人工神经元网络辅助丙烷氨氧化制丙烯腈催化剂设计的研究进展结果．通过筛选得到了可以拟合该反应体系的神经元网络模型，从而使丙烷转化率和丙烯腈选择性可以表示为催化剂组成的函数，利用培训后的神经元网络模型所得到的权值文件，结合作者自编的优化程序，该网络可用于预测最优的催化剂组成．实验得到丙烯腈收率和选择性可分别达到４３．０％和５６．２４％．     

神经网络法用于多元混酸同时测定

利用多层神经网络误差反向传播算法处理酸碱电位滴定数据，求得出多元混合酸各组分的浓度，优化了神经网络的结构和参数，测定了三组分有机酸混合样品，结果良好，平均相对偏差ＲＳＤ≤４％。     

Unraveling the mystery of efficacy in Chinese medicine formula: New approaches and technologies for research on pharmacodynamic substances

Traditional Chinese medicine (TCM) is the key to unlock treasures of Chinese civilization. TCM and its compound play a beneficial role in medical activities to cure diseases, especially in major public health events such as novel coronavirus epidemics across the globe. The chemical composition in Chinese medicine formula is complex and diverse, but their effective substances resemble “mystery boxes”. Revealing their active ingredients and their mechanisms of action has become focal point and difficulty of research for herbalists. Although the existing research methods are numerous and constantly updated iteratively, there is remain a lack of prospective reviews. Hence, this paper provides a comprehensive account of existing new approaches and technologies based on previous studies with an in vitro to in vivo perspective. In addition, the bottlenecks of studies on Chinese medicine formula effective substances are also revealed. Especially, we look ahead to new perspectives, technologies and applications for its future development. This work reviews based on new perspectives to open horizons for the future research. Consequently, herbal compounding pharmaceutical substances study should carry on the essence of TCM while pursuing innovations in the field.     

Modeling of the relationship between electroosmotic flow and separation parameters in capillary zone electrophoresis using artificial neural networks and experimental design

The prediction of migration time of electroosmotic flow (EOF) marker was achieved by applying artificial neural networks (ANN) model based on principal component analysis (PCA) and standard normal distribution simulation to the input variables. The voltage of performance, the temperature in the capillary, the pH and the ionic strength of background electrolytes (BGE) were applied as the input variables to ANN. The range of the performance voltage studied was from 15 to 27 kV, and that of the temperature in the capillary was from 20 to 30 °C. For the pH values studied, the range was from 5.15 to 8.04. The range of the ionic strength investigated in this paper was from 0.040 to 0.097. The prediction abilities of ANN with different pre-processing procedure to the input variables were compared. Under the same performance conditions, the average prediction error of the migration time of the EOF marker was 5.46% with RSD = 1.76% according to 10 parallel runs of the optimized ANN structure by the proposed approach, and that of the 10 parallel predictions of the optimal ANN structure for the different performance conditions was 12.95% with RSD = 2.29% according to the proposed approach. The study showed that the proposed method could give better predicted results than other approaches discussed.     

The alternating basis algorithm for assignment problems

The purpose of this paper is to present a new primal extreme point algorithm for solving assignment problems which both circumvents and exploits degeneracy. The algorithm is based on the observation that the degeneracy difficulties of the simplex method result from the unnecessary inspection of alternative basis representations of the extreme points. This paper characterizes a subsetQ of all bases that are capable of leading to an optimal solution to the problem if one exists. Using this characterization, an extreme point algorithm is developed which considers only those bases inQ. Computational results disclose that the new algorithm is substantially more efficient than previously developed primal and primal-dual extreme point (simplex) methods for assignment problems.     

Cost operator algorithms for the transportation problem

A primal transportation algorithm is devised via post-optimization on the costs of a modified problem. The procedure involves altering the costs corresponding to the basic cells of the initial (primal feasible) solution so that it is dual feasible as well. The altered costs are then successively restored to their true values with appropriate changes in the optimal solution by the application of cell or area cost operators discussed elsewhere. The cell cost operator algorithm converges to optimum within (2T – 1) steps for primal nondegenerate transportation problems and [(2T + 1) min (m, n)] – 1 steps for primal degenerate transportation problems, whereT is the sum of the (integer) warehouse availabilities (also the sum of the (integer) market requirements) andm andn denote the number of warehouses and markets respectively. For the area cost operator algorithm the corresponding bounds on the number of steps areT and (T + 1) min (m, n) respectively.This report was prepared as part of the activities of the Management Sciences Research Group, Carnegie—Mellon University, under Contract N00014-67-A-0314-0007 NR 047-048 with the U.S. Office of Naval Research.     

Optimization of the Microwave-Assisted Saponification and Extraction of Organic Pollutants from Marine Biota Using Experimental Design and Artificial Neural Networks

Several improvements in sample pretreatment for the determination of organic pollutants (i.e. n-alkanes, polycyclic aromatic hydrocarbons, PAHs) in marine biota (mussels) are presented. The use of liquid nitrogen and homogenization of the samples are shown to be an alternative to the time consuming liophilization step required for the analysis of biota samples. Microwave-assisted hydrolysis and extraction are combined to isolate organic pollutants (19 n-alkanes and 27 PAHs) from biota matrices. Experimental design (ED) and artificial neural networks (ANNs) were used to optimize the experimental conditions. NIST-CRM 2978 was used to test the validity of the developed method which shows a good agreement with certified values.     

Application of an artificial neural network (ANN) and piezoelectric chemical sensor array for identification of volatile organic compounds

A piezoelectric chemical sensor array was developed using four quartz crystals. Gas chromatographic stationary phases were used as sensing materials and the array was connected to an artificial neural network (ANN). The application of the ANN method proved to be particularly advantageous if the measured property (mass, concentration, etc.) should not be connected exactly to the signal of the transducers of the piezoelectric sensor. The optimum structure of neural network was determined by a trial and error method. Different structures were tried with several neurons in the hidden layer and the total error was calculated. The optimum values of primary weight factors, learning rate (η=0.15), momentum term (μ=0.9), and the sigmoid parameter (β=1) were determined. Finally, three hidden neurons and 900 training cycles were applied. After the teaching process the network was used for identification of taught analytes (acetone, benzene, chloroform, pentane). Mixtures of organic compounds were also analysed and the ANN method proved to be a reliable way of differentiating the sensing materials and identifying the volatile compounds.     

Sequential injection system with higher dimensional electrochemical sensor signals Part 1. Voltammetric e-tongue for the determination of oxidizable compounds

A sequential injection analysis (SIA) system was developed with the aim of obtaining an automatic and versatile way to prepare standards needed in the study of systems with higher dimensional sensor signals. To illustrate this, different analytical techniques were used in determinations of several analytes. Automated potentiometric calibrations of different potentiometric sensors, with and without interference, were carried out. Useful determinations of selectivity coefficients with two degrees of freedom were obtained. Simultaneous voltammetric determinations have also been done. Firstly, simultaneous determinations of lead and cadmium, using epoxy-graphite composite as the working electrode, have enabled a separate calibration for each metal to be obtained. Next, a voltammetric electronic tongue was designed and applied to the determination of oxidizable species. The use of artificial neural networks has solved the overlapped signal of ascorbic acid, 4-aminophenol and 4-acetamidophenol (paracetamol). A set of 63 data points was prepared automatically and has facilitated the training of an electronic tongue for these three analytes. Accurate predictions of test solutions, in the range of 12–410 μM for ascorbic acid, 17–530 μM for 4-aminophenol and 10–420 μM for paracetamol, have been achieved with RMSEs lower than 0.10 μM.