Transition state geometry in radical abstraction reactions: comparison of interatomic distances in the intersecting parabolas and Morse curves models with quantum-chemical calculations

Interatomic distances in the transition state were estimated for the reactions of radical abstraction: H^· + H₂, H^· + HCl, H^· + CH₄, N^·H₂ + NH₃, HO^· + H₂O, HO₂ ^· + HOOH, and C^·H₃ + SiH₄. The calculation was performed by the quantum-chemical density functional method or coupled clusters method (QCH), as well as by the methods of intersecting parabolas (IPM) and Morse curves (IMM), using experimental data (activation energies and reaction enthalpies). The results of the latter two methods are close to the quantum-chemical calculation and differ only by the increment a: r(IPM or IMM) = a + r(QCH), where a = –4.5·10^–12 m for IPM and a = +1.9·10^–12 m for IMM.     

Synthesis of nanostructures based on 1,4- and 1,3,5-phenylethynyl units with π-extended conjugation. Carbon networks dendrimer base units

A convenient and efficient synthesis of 3,5-di(silylethynyl)phenylacetylene and p-[3,5-di(silylethynyl)phenylethynyl]phenylacetylene has been carried out. These compounds serve to prepare nanometer-sized conjugated 1,4- and 1,3,5-phenylethynyl oligomers, by means of cross-coupling with a convenient haloaryl derivative, catalysed by palladium(II), in excellent yields. The phenylethynyl homologues show fluorescence emission, the wavelength of which is displaced by approximately 20 nm by each phenylethynyl unit increasing the conjugate chain.     

Exploring potential energy surfaces for chemical reactions: an overview of some practical methods

Potential energy surfaces form a central concept in the application of electronic structure methods to the study of molecular structures, properties, and reactivities. Recent advances in tools for exploring potential energy surfaces are surveyed. Methods for geometry optimization of equilibrium structures, searching for transition states, following reaction paths and ab initio molecular dynamics are discussed. For geometry optimization, topics include methods for large molecules, QM/MM calculations, and simultaneous optimization of the wave function and the geometry. Path optimization methods and dynamics based techniques for transition state searching and reaction path following are outlined. Developments in the calculation of ab initio classical trajectories in the Born-Oppenheimer and Car-Parrinello approaches are described.     

Electroanalysis of Bisphenols A,F, and Z Using Graphene Based Stochastic Microsensors

Two stochastic microsensors based on immobilization of the complex between protoporphyrin IX and cobalt on nanographene paste and on the reduced graphene oxide paste were proposed for the simultaneous identification and quantification of bisphenols A (BPA), F (BPF) and Z (BPZ) from water samples. The signatures obtained for the BPA, BPF, and BFZ when both stochastic microsensors were used shown that the microsensors can be used for the discrimination between the three bisphenols in water samples. Very low limits of determination were obtained for the three bisphenols: 1fmol/L for BPA and BPF when the microsensor based on the immobilization of the complex between protoporphyrin IX and cobalt on nanographene paste was used, and 10fmol/L for BPZ when the microsensor based on the immobilization of the complex between protoporphyrin IX and cobalt on reduced graphene oxide paste was used. The linear concentration ranges covered by the proposed stochastic microsensors were: between 10^?15 and 10^?5 mol/L for BPA, between 10^?15 and 10^?7 mol/L for BPF, and between 10^?13 and 10^?10 mol/L for BPZ. The recoveries of the bisphenols in water samples were higher than 99.50 %, with RSD values lower than 1.00 %.     

Oxotitanium(IV) complexes of some bis‐unsymmetric Schiff bases: Synthesis,structural elucidation and biomedical applications

A number of oxotitanium(IV) complexes of the type TiOL with bis‐unsymmetric dibasic tetradentate Schiff base (LH₂) containing ONNO donor atoms have been synthesized. Mono‐Schiff base (OPD‐HNP) was prepared by the condensation of 1:3 molar ratio of 2‐hydroxy‐1‐naphthaldehyde (HNP) with o‐phenylenediamine (OPD). Dibasic unsymmetric tetradentate diamine Schiff bases were prepared by the reaction of OPD‐HNP with 2‐hydroxyacetophenone, 2‐hydroxypropeophenone, benzoylacetone, acetylacetone and ethylacetoacetate. Further, titanylacetylacetonate was reacted with these ligands to obtain their metal complexes. On the basis of analytical and physiochemical data, the formation of complexes as TiOL was suggested having square pyramidal geometry. Quantum mechanical approach also confirmed this geometry. The assessment of the synthesized ligands and their complexes showed that some behave as good inhibitors of mycelial growth against selected phytopathogic fungi but weak inhibitors against some selected bacteria. A few of them also showed antioxidant properties.     

Bonding Energies and Structural Study of Alkylaluminium

Neutral aluminium alkyls are well known to act as ethylene oligomerization and polymerization catalysts and cocatalysts.On the basis of the full optimization of alkylaluminium compounds with Gaussian 98 program package at the B3LYP/6-31G** level,the selected structures and bonding energies were investigated extensively.The geometries and bonding energies of AlR3(R = H,CH3,C2H5,C3H7,C4H9) and Al(C2H5)2R'(R' = C2H5,C3H7,C4H9,C5H11,C6H13) were investigated extensively,and we found that,along with the prolongation of carbon chains the terminal C-C bond is shortened gradually until to a constant value of about 0.1532 nm in C4H9;and the bonding energy almost remains constant.The dative bonding of C2H4 to Al(C2H5)3,whose bonding energy is only 15.30 kJ/mol,is very weak.     

Bis(2-(1H-imidazol-2-yl)-pyridine)copper(II): Effects of counteranions on the molecular and supramolecular structures

The synthesis and physical properties of bis(2-(1H-imidazol-2-yl)-pyridine)copper(II) with chloride, nitrate and perchlorate as counteranions have been described. Microanalysis, magnetic susceptibility, conductivity and various spectroscopic measurements have been used for the characterization of the complexes. The crystal structures of all three complexes have been determined. Intermolecular hydrogen-bonding interactions and the resulting self-assembly patterns for each of the species have been scrutinized. The chloride containing complex crystallizes as a trihydrate, where the metal ion is in a tetragonally elongated cis-N₄Cl₂ coordination sphere. This complex provides a three-dimensional honeycomb-like structure through N–H?Cl, O–H?Cl and O–H?O hydrogen bonds. In the nitrate containing species, one of the two counteranions coordinates to the metal centre to provide an irregular N₄O₂ coordination sphere, while the other counteranion, with the help of a lattice water molecule, assembles a ladder-like structure via N–H?O and bifurcated O–H?O,O hydrogen bonds. A one-dimensional polymeric species has been formed when perchlorate is the counteranion. Here one of the two perchlorates acts as a bridge between the metal centres that are in tetragonally elongated trans-N₄O₂ coordination spheres. This polymeric chain, together with the second perchlorate and a water molecule, form a ribbon-like structure due to N–H?O and O–H?O hydrogen bonds.     

Ligand-protein docking using a quantum stochastic tunneling optimization method

A novel hybrid optimization method called quantum stochastic tunneling has been recently introduced. Here, we report its implementation within a new docking program called EasyDock and a validation with the CCDC/Astex data set of ligand-protein complexes using the PLP score to represent the ligand-protein potential energy surface and ScreenScore to score the ligand-protein binding energies. When taking the top energy-ranked ligand binding mode pose, we were able to predict the correct crystallographic ligand binding mode in up to 75% of the cases. By using this novel optimization method run times for typical docking simulations are significantly shortened.     

Chains in Critical Fluids and Nanopores

Summary: The conformational behavior of a polymer in a critical binary solvent confined in a porous medium is studied. The size of the polymer in bulk, which is mainly governed by the correlation length of the solvent density fluctuations, depends on the proximity to the critical point of the binary mixture. We find that in contrast to the bulk behavior, the conformational properties of the polymer in a porous medium depends strongly on the pore size. The latter controls the correlation length of the solvent density fluctuations and thus determines the polymer size.     

二(三苯基膦)水杨酸铜(Ⅰ)乙醇溶剂配合物的晶体结构

0IntroductionThestudyofcopper?complexesisinvestigatedinmanylaboratories.Amongthereasonsforcarryingouttheinvestigationofsuchspeciesaretheirstructuralfeatures犤1犦,theusefulnessofcopper?compoundsinorganicsyntheses犤2犦andthewell-documentedimpor-tanceofcopper?centersattheactivesitesofanumberofprotein犤3犦.Concerningcopper?carboxy-latesafurtherinterestexists,stemmingfromtheiruseinhomogeheouscatalysedhydrogenation犤4犦.Thecopper?bis(triphenylphosphine)cationisasoft,butflexi-bleacceptorionthatcanacc…