Effect of the environment on the stability of surfactant–polypeptide self‐assembled complexes: Molecular dynamics simulations of stoichiometric complexes formed by N‐dodecyltrimethylammonium and poly(α,L‐glutamate) in chloroform,methanol, and water

A series of molecular dynamics simulations have been performed to study the supramolecular structure of self‐assembled complexes formed by N‐dodecyltrimethylammonium cations and the synthetic polypeptide poly(α,L ‐glutamate). The influence of the type of solvent has been investigated, considering explicit environments of chloroform, water, and methanol on a stoichiometric complex containing 15 residues. In chloroform, the complex stabilizes in a regular structure: the polypeptide adopts an α‐helix conformation that is regularly surrounded by surfactant molecules to form electrostatic interactions through a multiple interaction pattern. However, this structure destabilizes in methanol and water: (a) the α‐helix unfolds in the two solvents and (b) the electrostatic links between the surfactant molecules and the polyanion are disrupted in aqueous solution, although these interactions are still preserved in methanol. The role of the solvent environment in stabilizing or destabilizing the polypeptide secondary structure, the organization of the surfactant molecules, and predominantly the surfactant–polypeptide supramolecular organization is discussed in detail. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 1122–1133, 2006     

Conformational changes of the amyloid beta-peptide (1-40) adsorbed on solid surfaces

The conformational change of the 39-43 residues of the amyloid beta-peptide (Abeta) toward a beta-sheet enriched state promotes self-aggregation of the peptide molecules and constitutes the major peptide component of the amyloid plaques in Alzheimer patients. The crucial question behind the self-aggregation of Abeta is related to the different pathways the peptide may take after cleavage from the amyloid precursor proteins at cellular membranes. This work is aiming at determining the conformation of the Abeta (1-40) adsorbed on hydrophobic Teflon and hydrophilic silica particles, as model sorbent surfaces mimicking the apolar transmembrane environment and the polar, charged membrane surface, respectively. The mechanism by which the Abeta interacts with solid surfaces strongly depends on the hydrophobic/hydrophilic character of the particles. Hydrophobic and electrostatic interactions contribute differently in each case, causing a completely different conformational change of the adsorbed molecules on the two surfaces. When hydrophobic interactions between the peptide and the sorbent prevail, the adsorbed Abeta (1-40) mainly adopts an alpha-helix conformation due to H-bonding in the apolar part of the peptide that is oriented towards the surface. On the other hand, when the peptide adsorbs by electrostatic interactions beta-sheet formation is promoted due to intermolecular association between the apolar parts of the adsorbed peptide. Irrespective of the characteristics of the solid sorbent, crowding the surface results in intermolecular association between adsorbed molecules leading to a strong aggregation tendency of the Abeta (1-40). [Diagram: see text] CD spectra of Abeta (1-40) at pH 7: A) in solution ([Abeta]=0.2 mg.ml(-1)) freshly prepared (line) and after overnight incubation (symbols);B) on Teflon (Gamma=0.5 mg.m(-2)).     

New 2D graphical representation of DNA sequences

We consider a 2D graphical representations of DNA sequences, which avoids loss of information associated with crossing and overlapping of the corresponding curve. We outline an approach, which is based on the construction of a three-component vector whose components are the normalized leading eigenvalues of the L/L matrices associated with DNA. The examination of similarities/dissimilarities among the coding sequences of the first exon of beta-globin gene of different species illustrates the utility of the approach.     

基于两时相图像联合分类的SAR图像变化检测

传统分类后比较法(post-classification comparison,PCC)存在分类累积误差问题,且对单幅图像分类精度要求较高,对此,根据不同时相图像的不变信息所具有的相关性,提出了一种基于两时相图像联合分类的SAR图像变化检测方法.该方法以灰度值作为输入信息,通过相似度计算可得两时相图像对应位置像素的灰度相似度,然后求解全局相似度阈值,并用于控制基于K-均值的联合分类器对两时相图像进行联合分类,最后通过类别比较获得变化检测结果.实验结果表明本文方法不但可提高单幅图像的分类精度,而且能够精确地把不同时相图像的不变地物信息划分为同一类别,减少了分类累积误差的影响,提高了变化检测性能.     

Synthesis of well‐defined side chain fullerene polymers and study of their self‐aggregation behaviors

Monoalkynyl‐functionalized fullerene was precisely synthesized starting with pristine fullerene (C₆₀) and characterized by multiple techniques. Methyl methacrylate and 6‐azido hexyl methacrylate were then randomly copolymerized via reversible addition fragmentation chain transfer polymerization to build polymer backbones with well‐controlled molecular weights and copolymer compositions. Finally, these two moieties were covalently assembled into a series of well‐defined side chain fullerene polymers (SFPs) via the copper‐mediated click reaction which was verified by Fourier transform infrared spectroscopy and ¹H NMR. The fullerene loadings of the resultant polymers were estimated by thermogravimetric analysis and UV–vis spectroscopy, demonstrating consistent and high conversions in most of the samples. The morphology studies of the SFPs were performed both in solution and on solid substrates. Very intriguing self‐aggregation behaviors were detected by both gel permeation chromatography and dynamic light scattering analyses. Furthermore, the scanning electron microscopic images of these polymers showed the formation of various supramolecular nanoparticle assemblies and crystalline‐like clusters depending on the fullerene contents and polymer chain lengths. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013, 51, 3572–3582     

Clicked (AB)2C‐type miktoarm terpolymers: Synthesis,thermal and self‐assembly properties,and preparation of nanoporous materials

A well‐defined (PEO‐PS)₂‐PLA miktoarm terpolymer ( 1 ) was synthesized by stepwise click reactions of individually prepared poly(ethylene oxide) (PEO), polystyrene (PS, polymerized by atom transfer radical polymerization), and polylactide (PLA, polymerized by ring‐opening polymerization) blocks. As characterized by differential scanning calorimetry and small‐angle X‐ray scattering techniques, the terpolymer self‐assembled into a hexagonal columnar structure consisting of PLA/PEO cylindrical cores surrounded by PS chains. In contrast, the ion‐doped sample ( 1‐Li⁺ ) with lithium concentration per ethylene oxide = 0.2 exhibited a three‐phase lamellar structure, which was attributed to the microphase separation between PEO and PLA blocks and to the conformational stabilization of the longest PLA chain. The two‐phase columnar morphology before the ion doping was used to prepare a nanoporous material. PLA chains in the cylindrical core region were hydrolyzed by sodium hydroxide, producing nanopores with a pore diameter of about 14 nm. The resulted nanoporous material sank to the bottom in water, because of water‐compatible PEO chains on the walls. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Nanoassemblies with light‐responsive size and density from linear flexible polyelectrolytes

This study presents electrostatically self‐assembled nanoparticles from linear flexible polyelectrolytes (poly(diallyldimethylammonium chloride or quarternized poly(4‐vinylpyridine)) and an ionic photo‐isomerizable azo dye (Acid Yellow 38) that can change their size upon UV‐light irradiation. Assemblies with narrow size distribution are stable in aqueous solution. For samples with under‐stoichiometric dye load, UV‐light exposure triggers a size decrease, e.g. from a hydrodynamic radius of R_h = 94 nm to R_h = 62 nm for an Ay38‐PDADMAC sample with a charge ratio of l_charge = 0.7. Size changes are caused by trans‐cis isomerization of the dye, accompanied by a change in hydrophilicity, binding enthalpy and entropy. Assemblies are characterized by static and dynamic light scattering, atomic force microscopy, UV–vis spectroscopy and isothermal titration calorimetry. Zeta potential measurements give insight into the electrostatic stabilization and size‐control of the ionic nano‐assemblies, revealing a master curve of effective surface charge density versus hydrodynamic radius. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys., 2013