案例教学与翻转学习结合提升物理化学教学质量

结合我校应用型人才培养方案和培养目标,通过改革物理化学课堂教学提高学生知识掌握能力和应用能力。在传统课堂的基础上,将案例教学结合在翻转学习的教学过程中,充分提高学生的学习积极性与主动性。以稀溶液的依数性为教学案例,阐述翻转学习与案例教学的实施过程。学生深度参与课堂、融入课堂并互动,师生之间在教学中达到共鸣,实现教学相长,从而提高物理化学教学质量。     

Cheminformatics in MS-based environmental exposomics: Current achievements and future directions

Compound annotation using MS/MS data is the major bottleneck in interpretation of mass spectrometry data during non-targeted screening and suspect screening exposomics studies. Apart from compound identification using available databases or mass spectral libraries, the true challenge comes when completely new compounds have to be identified. Along with recent advances in MS instrumentation that set grounds to a new revolutionary age in environmental exposomics, a multitude of cheminformatics annotation approaches has been developed. Herein, we review the basic principles of the cutting-edge cheminformatics MS-based approaches employed in eco-exposome annotation.We give a solid background discussing the eco-exposome concept in relation to the advances in MS instrumentation, and define the three crucial cheminformatics tasks used in the eco-exposome annotation: molecular formula assignment, compound prioritization and compound annotation. The basic principles of compound annotation are discussed, which are based on three approaches of utilizing structural information inherent to MS data. These involve direct, indirect and joint annotation approaches. We assess their performance through the ability to annotate eco-exposome constituents. We discuss future perspectives and give directions to new annotation strategies and performance evaluation protocols aiming to solve current issues hampering the incorporation of cheminformatics annotation approaches in regular eco-exposome annotation workflows.     

Accelerated Nuclear Magnetic Resonance Spectroscopy with Deep Learning

Nuclear magnetic resonance (NMR) spectroscopy serves as an indispensable tool in chemistry and biology but often suffers from long experimental times. We present a proof‐of‐concept of the application of deep learning and neural networks for high‐quality, reliable, and very fast NMR spectra reconstruction from limited experimental data. We show that the neural network training can be achieved using solely synthetic NMR signals, which lifts the prohibiting demand for a large volume of realistic training data usually required for a deep learning approach.     

Prediction of 5-hydroxytryptamine transporter inhibitors based on machine learning

In patients with depression, the use of 5-HT reuptake inhibitors can improve the condition. Machine learning methods can be used in ligand-based activity prediction processes. In order to predict SERT inhibitors, the SERT inhibitor data from the ChEMBL database was screened and pre-processed. Then 4 machine learning methods (LR, SVM, RF, and KNN) and 4 molecular fingerprints (CDK, Graph, MACCS, and PubChem) were used to build 16 prediction models. The top 5 models of accuracy (Q) in the cross-validation of training set were used to build three different ensemble learning models. In the test1 set, the VOT_CLF3 model had the largest SP (0.871), Q (0.869), AUC (0.919), and MCC (0.728). In the unbalanced test2 set, VOT_CLF3 had the largest SE (0.857), SP (0.867), Q (0.865) and MCC (0.639). VOT_CLF3 was recommended for the virtual screening process of SERT inhibitors. In addition, 12 molecular structural alerts that frequently appear in SERT inhibitors were found (P < 0.05), which provided important reference value for the design work of SERT inhibitors.     

Density Functional Theory as a Data Science

The development of density functional theory (DFT) functionals and physical corrections are reviewed focusing on the physical meanings and the semiempirical parameters from the viewpoint of data science. This review shows that DFT exchange‐correlation functionals have been developed under many strict physical conditions with minimizing the number of the semiempirical parameters, except for some recent functionals. Major physical corrections for exchange‐correlation function‐ als are also shown to have clear physical meanings independent of the functionals, though they inevitably require minimum semiempirical parameters dependent on the functionals combined. We, therefore, interpret that DFT functionals with physical corrections are the most sophisticated target functions that are physically legitimated, even from the viewpoint of data science.     

Combining convolutional neural networks and in‐line near‐infrared spectroscopy for real‐time monitoring of the chromatographic elution process in commercial production of notoginseng total saponins

The chromatographic elution process is a key step in the production of notoginseng total saponins. Due to quality variability of loading samples and resin capacity decreasing over cycle time, saponins, especially the five main saponins of notoginseng total saponins, need to be monitored in real time during the elution process. In this study, convolutional neural networks, one of the most popular deep learning methods, were used to develop quantitative calibration models based on in‐line near‐infrared spectroscopy for notoginsenoside R₁, ginsenosides Rg₁, Re, Rb₁ and Rd, and their sum concentration, with root mean square error of prediction values of 0.87, 2.76, 0.60, 1.57, 0.28, and 4.99 mg/mL, respectively. Partial least squares calibration models were also developed for model performance comparison. Results show predicted concentration profiles outputted by both the convolutional neural network models and partial least squares models show agreements with the real trends defined by reference measurements, and can be used for elution process monitoring and endpoint determination. To the best of our knowledge, this is the first reported case study of combining convolutional neural networks and in‐line near‐infrared spectroscopy for monitoring of the chromatographic elution process in commercial production of botanical drug products.     

Machine-Learning Adsorption on Binary Alloy Surfaces for Catalyst Screening

Over the last few years, machine learning is gradually becoming an essential approach for the investigation of heterogeneous catalysis. As one of the important catalysts, binary alloys have attracted extensive attention for the screening of bifunctional catalysts. Here we present a holistic framework for machine learning approach to rapidly predict adsorption energies on the surfaces of metals and binary alloys. We evaluate different machine-learning methods to understand their applicability to the problem and combine a tree-ensemble method with a compressed-sensing method to construct decision trees for about 60000 adsorption data. Compared to linear scaling relations, our approach enables to make more accurate predictions lowering predictive root-mean-square error by a factor of two and more general to predict adsorption energies of various adsorbates on thousands of binary alloys surfaces, thus paving the way for the discovery of novel bimetallic catalysts.     

模糊强化学习型的图像矢量量化算法

本文给出了一种新的图像矢量量化码书的优化设计方法.传统矢量量化方法只考虑了码字与训练矢量之间的吸引影响,所以约束了最优解的寻解空间.本文提出了一种新的学习机理--模糊强化学习机制,该机制在传统的吸引因子基础上,引入新的排斥因子,极大地释放了吸引因子对最优解的寻解空间的约束.新的模糊强化学习机制没有采用引入随机扰动的方法来避免陷入局部最优码书,而是通过吸引因子和排斥因子的合力作用,较准确地确定了每个码字的最佳移动方向,从而使整体码书向全局最优解靠近.实验结果表明,基于模糊强化学习机制的矢量量化算法始终稳定地取得显著优于模糊K-means算法的性能,较好地解决了矢量量化中的码书设计容易陷入局部极小和初始码书影响优化结果的问题.     

医学影像处理的深度学习可解释性研究进展

随着医学影像数据的迅速增长,传统的影像分析方法给医生带来巨大挑战。利用计算机视觉技术提供自动或半自动辅助诊断,可大大缓解人工阅片压力,提高诊断的准确性,促进医疗流程的标准化建设等。目前,深度学习卷积神经网络在医学影像处理中已取得不俗表现,但深度学习“黑匣子”的不可解释性阻碍了智能医疗诊断的发展。为增强对医学影像数据处理的深度学习可解释性的了解,对近几年相关研究进展进行了综述。首先,综述了深度学习在医学领域的应用现状及面临的问题,对神经网络的可解释性内涵进行了讨论;然后,从现有深度学习可解释性的常见方法出发,重点讨论了医学影像处理的深度学习可解释性研究进展;最后,探讨了医学影像处理的深度学习可解释性的发展趋势。