Development of a systems analysis approach for resolving the structure of biodegrading soil systems

An experimental and mathematical method is developed for the microbial systems analysis of polyaromatic hydrocarbon (PAH)-degrading mixed cultures in PAH-contaminated “town gas” soil systems. Frequency response is the primary experimental and data analysis tool used to probe the structure of these complicated systems. The objective is to provide a fundamental protocol for evaluating the performance of specific mixed microbial cultures on specific soil systems by elucidating the salient system variables and their interactions. Two well-described reactor systems, a constant volume stirred tank reactor (CSTR) and a plug flow differential volume reactor, are used in order to remove performance effects that are related to reactor type as opposed to system structure. These two reactor systems are well-defined systems that can be described mathematically and represent the two extremes of one potentially important system variable, macroscopic mass transfer. The experimental and mathematical structure of the protocol is described, experimental data is presented, and data analysis is demonstrated for the stripping, sorption, and biodegradation of napththalene.     

Reverse permeation of sodium ions driven by pH difference across a liquid membrane: time dependencies of membrane resistance and membrane potential in a reverse permeation system

The diffusional flux of sodium ions across a liquid membrane was observed as a reverse permeation phenomenon: sodium ions were transported across the membrane against their own concentration difference. A supported liquid membrane having stearic acid as an ionic carrier was used. The internal aqueous phase contained NaCl and HCl and the external aqueous phase contained NaOH of the same initial concentration as NaCl in the internal aqueous phase. The reverse permeation occurred with a long time delay. During the delay, sodium ions flowed from the acidic to alkaline solution. The diffusion coefficient of sodium ion estimated from the flux equation taking into account the Donnan equilibrium at the interface was found to be much greater than that in the membrane solvent, 1-octanol. In the same membrane system as for the flux measurement, the membrane conductance and the membrane potential were measured as a function of time. The time dependence of the membrane potential in the presteady state showed a biphasic behavior. The initial rapid phase could be attributed to the change in the phase boundary potential and the subsequent slow step to the change in the diffusion potential within the membrane. Before the steady membrane potential had been reached, the reverse permeation of sodium ions against their own concentration difference was not observed. During the slow relaxation process of the membrane potential, the membrane resistance decreased to approach the steady state. Moreover, the oscillation of membrane potential abruptly started at a time in the slow step of the potential change and continued during the steady state. It was suggested that, at the presteady state, the increase in the amount of water in the membrane would drive a drastic change in the state of the liquid membrane in the filter pore, e.g. an inverted micellar structure making.     

H2S-sensing properties of SnO2 produced by ball milling and different chemical reactions

In this work, the mechanochemical synthesis of a moderately agglomerated tin oxide (SnO₂) powders and the subsequent preparation of semiconductor gas sensors as prototypes, were studied. Tin (II) chloride (SnCl₂) powder was milled with calcium hydroxide (Ca(OH)₂) and potassium carbonate, (K₂CO₃) powder, respectively, in a ball mill at room temperature and in an air atmosphere. Heat treatment of milled mixtures at 400 °C resulted in the formation of a tetragonal phase, confirmed by X-ray diffraction (XRD). During milling in the presence of water, a high number of hydroxide (OH) groups are formed at the surface. When SnCl₂ was milled with K₂CO₃, no water was produced and the Fourier-transform infrared spectrum (FT-IR) of the powder has no surface hydroxyl deformations. On exposure to hydrogen sulfide (H₂S) gas, the particles, prepared from anhydrous powder, have higher sensitivity than these, prepared from hydrated powder. The SnO₂ thick film, prepared from anhydrous powder may be successfully applied to a H₂S gas sensor.     

A new dodecylsulfate-selective supported liquid membrane electrode based on its N-cetylpyridinium ion-pair

A supported liquid and a poly(vinyl chloride) (PVC)-based membrane selective for dodecylsulfate (DS⁻) ion are described. The active element is a membrane containing a dissolved ion association complex of DS⁻ with cetylpyridinium (CP⁺) cation. The supported liquid membrane electrode (acetophenone as solvent) showed a Nernstian response towards the DS⁻ anion over the concentration range of sodium dodecylsulfate (SDS) from 8.3×10⁻³ to 1.0×10⁻⁶ mol dm⁻³ at 25 °C. The proposed electrode also showed a super-Nernstian potential response (108±2 mV decade⁻¹) at low concentrations (1.0×10⁻⁹ to 1.0×10⁻⁶ mol dm⁻³). Moreover, this electrode showed good selectivity and precision (R.S.D.?2.0%), and was usable within the pH range 4.0-6.8. The proposed electrode revealed a lower limit of detection of 6.3×10⁻⁷ mol dm⁻³ and improved selectivity in comparison with the some previously reported DS⁻ ion selective electrodes. The isothermal temperature coefficient of this electrode amounted to −0.001 V °C⁻¹. The liquid membrane electrode may find application in the direct determination of SDS by the standard addition method at pH 5.0, and in the physicochemical studies of surfactant solutions.     

Investigation of the Interactions of β‐Peptides with DNA Duplexes by Circular Dichroism Spectroscopy

The interaction of β‐peptides with the DNA duplexes of dA₂₀dT₂₀ and a GCN4‐binding CRE sequence was examined. To gauge the factors that govern these interactions, two β‐pentadecapeptides, 1 and 2 , a β‐dodecapeptide, 3 , three β‐decapeptides, 4 – 6 , three β‐heptapeptides, 7 – 9 , and β‐octaarginine 10 were designed and synthesized. The β‐peptides were conceived to adopt a β‐peptide 3₁₄ helix, in which the side chains at position i and i + 3 are aligned vertically along one side of the helix. The side chains of Lys, Asn, and Arg were positioned such that potential H‐bonding sites were created for a helical conformation to interact with the base pairs of DNA. CD Analysis showed that β‐peptides 1, 2 , and 10 interacted with dA₂₀dT₂₀. In addition, β‐peptides 1 and 2 showed significant interaction with a DNA‐duplex 20mer containing the ATF/CREB recognition sequence for the regulatory protein GCN4. It is impossible, at this stage of the investigation, to make a safe proposal about the actual nature of the interaction of the structures(s) of the complexes, the formation of which is suggested by the CD spectra reported herein.     

Conformation of Tax-response elements in the human T-cell leukemia virus type I promoter

Background: HTLV I Tax is believed to activate viral gene expression by binding bZIP proteins (such as CRIB) and increasing their affinities for proviral THE target sites. Each 21 by THE target site contains an imperfect copy of the intrinsically bent CRE target site (the TRE core) surrounded by highly conserved flanking sequences. These flanking sequences are essential for maximal increases in DNA affinity and transactivation, but they are not, apparently, contacted by protein. Here we employ non-denaturing gel electrophoresis to evaluate TRE conformation in the presence and absence of bZIP proteins, and to explore the role of DNA conformation in viral transactivation.Results: Our results show that the TRE-1 flanking sequences modulate the structure and modestly increase the affinity of a CREB bZIP peptide for the TRE-1 core recognition sequence. These flanking sequences are also essential for a maximal increase in stability of the CREB-DNA complex in the presence of Tax.Conclusions: The CRE-like TRE core and the TRE flanking sequences are both essential for formation of stable CRIB-TRE-1 and Tax-CREB-TRE-1 complexes. These two DNA segments may have co-evolved into a unique structure capable of recognizing Tax and a bZIP protein.     

Capillary electrophoresis of trace metals in highly saline physiological sample matrices

Trace metal ions in highly saline samples such as urine were determined with capillary electrophoresis (CE) without desalting or off-line preconcentration. By mixing with a dye, 4-(2-pyridylazo) resorcinol (PAR), the metal ions were converted into anionic complexes having strong absorbance near 500 nm. A large volume of the metal-PAR complex sample solution injected into a coated capillary was stacked isotachophoretically and separated under a reverse potential. The salt anion (chloride) and PAR in the sample matrix acted as the leading and terminating electrolytes, respectively. In a sample containing a 250 mM NaCl matrix, more than 400-fold enhancement in the absorbance detector response was realized compared to the normal CE injection mode. Combination of the dye complexation and isotachophoretic stacking provided excellent detection limits (S/N = 3) for three trace metal ions in the low ppb range (Fe(2+), 0.7 ppb, Ni(2+), 0.4 ppb; Zn(2+), 1.2 ppb) with absorbance detection. The migration time reproducibility was excellent (relative standard deviations: standard samples < 1%, urine samples approximately 1%). The proposed method is convenient and fast, and the sample analysis can be completed within 20 min.     

外腔长度对FBG-ECL输出特性的影响

根据光纤光栅外腔半导体激光器(FBG-ECL)的等效腔模型,讨论了外腔长度对FBG-ECL的调制特性、线宽以及强度噪声的影响.指出增大外腔长度可以使FBG-ECL具有很窄的线宽,非常适合应用在相干光通信系统中.同时发现,外腔长度的增大也将导致强度噪声、调制特性的恶化,外腔的选择对FBG-ECL应用在不同光通信系统中十分重要.     

脉冲泄流时土壤条件对冲击接地阻抗的影响

 为了探寻电流脉冲泄流时，设备的接地是否有效可靠，用FDTD法分析了脉冲泄流时均一土壤、分层土壤及局部改善土壤的电导率对冲击接地阻抗（TGR）的影响。结果表明：大地电导率对冲击接地阻抗的影响很大；对均一土壤，TGR随大地电导率的增大而减小，大地电导率越大，TGR对接地体的埋深越不敏感。对分层土壤，接地体要埋在大地电导率大的土壤层中，且不要靠近交界面；局部改善大地导电性能对降低TGR效果明显，TGR对改善区域的体积非常敏感，而当电导率大于一定值时，大地电导率的再增加，对TGR的影响不明显。     

基于不完备频响函数的结构损伤统计识别研究

基于不完备频响函数数据,结合概率统计方法,提出了一种能同时考虑模型参数不确定性和测试噪声影响的结构损伤统计识别方法.首先,基于频响函数某一行向量在不同频率下的幅值数据,利用矩阵拉直运算建立了关于损伤系数的确定性识别方程.其次,假设模型参数误差和测试噪声为零均值的高斯随机变量,根据摄动理论,推导了损伤后结构刚度参数的前二...