Protein identification by peptide mass fingerprinting and peptide sequence tagging with alternating scans of nano-liquid chromatography/infrared multiphoton dissociation Fourier transform ion cyclotron resonance mass spectrometry

We have developed a method for protein identification with peptide mass fingerprinting and sequence tagging using nano liquid chromatography (LC)/Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). To achieve greater sensitivity, a nanoelectrospray (nano-ES) needle packed with reversed-phase medium was used and connected to the nano-ES ion source of the FTICR mass spectrometer. To obtain peptide sequence tag information, infrared multiphoton dissociation (IRMPD) was carried out in nano-LC/FTICR-MS analysis. The analysis involves alternating nano-ES/FTICR-MS and nano-ES/IRMPD-FTICR-MS scans during a single LC run, which provides sets of parent and fragment ion masses of the proteolytic digest. The utility of this alternating-scan nano-LC/IRMPD-FTICR-MS approach was evaluated by using bovine serum albumin as a standard protein. We applied this approach to the protein identification of rat liver diacetyl-reducing enzyme. It was demonstrated that this enzyme was correctly identified as 3-alpha-hydroxysteroid dehydrogenase by the alternating-scan nano-LC/IRMPD-FTICR-MS approach with accurate peptide mass fingerprinting and peptide sequence tagging.     

基于WUSB的RFID系统后台数据管理系统接口的设计

在RFID(射频识别)系统的阅读器和后台数据管理系统之间引进一种新的连接方法———无线连接,可以突破有线连接的限制。基于WUSB(W ireless USB)的无线连接方案传输距离适中、成本低、功耗低、开发简单、系统稳定,是目前较适合RFID系统的解决方案。同时提供详细、完整的实施方案,包含设计方法、数据流程和设计实例,并对有关芯片进行了描述。     

Book Reviews

Room temperature glass containing copper nitrate was produced using the microemulsion-gel method. Ultraviolet-visible spectroscopy and x-ray diffraction spectra were used to demonstrate the presence of copper nitrate in the gel samples. The samples were examined using optical microscopy, with and without polarized filters, and scanning electron microscopy with energy dispersive x-ray analysis, before and after the extraction of the surfactant with an organic solvent. The results indicated that copper nitrate was present throughout the silicate network formed and was associated with the microemulsion components, i.e., the interstitial liquid, remaining in the bulk material.     

Phishing attacks discovery based on HTML layout similarity

Based on the similarity of the layout structure between the phishing sites and real sites,an approach to discover phishing sites was presented.First,the tag with link attribute as a feature was extracted,and then based on the feature,the page tag sequence branch to identify website was extracted,followed by the page layout similarity-HTMLTagAntiPhish,the alignment of page tag sequence tree into the alignment of page tag sequence branches was converted,this converted two-dimention tree structure into one-dimention string structure,and finally through the substitution matrix of bioinfor-matics BLOSUM62 coding,alignment score quickly to improve the phishing sites detection efficiency was computed.A series of simulation experiments show that this approach is feasible and has higher precision and recall rates.     

基于软件身份标签的安全性研究

当前,由于软件发行商通常不为应用程序和可执行文件（程序文件,共享库,脚本等）提供用以验证其可靠性的关键信息,所以计算机管理员想要自动辨别这些文件是否被第三方修改过变得十分困难.通过与民航飞行的安全性要求进行类比,分析了软件身份标签如何从身份鉴别、应用关联、防止篡改和未知威胁这四方面改善软件的安全性.     

Preparation of core–shell structure Fe3O4@SiO2 superparamagnetic microspheres immoblized with iminodiacetic acid as immobilized metal ion affinity adsorbents for His‐tag protein purification

The core–shell structure Fe₃O₄/SiO₂ magnetic microspheres were prepared by a sol–gel method, and immobiled with iminodiacetic acid (IDA) as metal ion affinity ligands for protein adsorption. The size, morphology, magnetic properties and surface modification of magnetic silica nanospheres were characterized by various modern analytical instruments. It was shown that the magnetic silica nanospheres exhibited superparamagnetism with saturation magnetization values of up to 58.1 emu/g. Three divalent metal ions, Cu²⁺, Ni²⁺ and Zn²⁺, were chelated on the Fe₃O₄@SiO₂–IDA magnetic microspheres to adsorb lysozyme. The results indicated that Ni²⁺‐chelating magnetic microspheres had the maximum adsorption capacity for lysozyme of 51.0 mg/g, adsorption equilibrium could be achieved within 60 min and the adsorbed protein could be easily eluted. Furthermore, the synthesized Fe₃O₄@SiO₂–IDA–Ni²⁺ magnetic microspheres were successfully applied for selective enrichment lysozyme from egg white and His‐tag recombinant Homer 1a from the inclusion extraction expressed in Escherichia coli. The result indicated that the magnetic microspheres showed unique characteristics of high selective separation behavior of protein mixture, low nonspecific adsorption, and easy handling. This demonstrates that the magnetic silica microspheres can be used efficiently in protein separation or purification and show great potential in the pretreatment of the biological sample. Copyright © 2015 John Wiley & Sons, Ltd.     

Concise Synthesis of Photocleavable Molecular Tag for Laser Desorption Ionization Mass Spectrometry via Fries Reaction

Abstract

A new synthetic route for the photocleavable molecular tag for laser desorption ionization mass spectrometry (LDI-MS) was achieved using the Fries reaction of 2,6-dimethylphenyl ester as its key reaction. Zirconium chloride was used as uniquely efficient adjuvant to promote the reaction. The molecular tag was obtained in five steps without chromatographic purification.

Supplemental materials are available for this article. Go to the publisher's online edition of Synthetic Communications® to view the free supplemental file.     

Accounting for variability in the design of circuits with organic thin-film transistors

We experimentally verify that the methodology to account for local parameter variations and transistor mismatch known in Si CMOS technologies can be transposed to organic thin-film transistor technologies, and we present a design case that makes use of design for variability. Transistor parameter variation decreases with the square root of the transistor footprint. As a consequence, Monte Carlo simulations which take this effect into account can be executed to better predict the final circuit yield. The design case in this work is an 8-bit, organic RFID transponder chip. The yield prediction by simulations corresponds to the finally observed circuit yield.     

Deployment strategy for static chargers in WRSN

The traditional deployment strategy of static chargers in wireless rechargeable sensor networks (WRSN) covers all the area.The basic idea is to cover all the positions of nodes.A mathematical model of distance between a charger and the farthest node was established,the relationship between the number of nodes and the mathematical expectation of minimum radius of charging was analyzed,and deployment strategy for static chargers was proposed.The method based on the locations of all nodes that need to be charged in the area,used the smallest enclosing circle (SEC) algorithm and finds the optimal location of the charger through Euclidean delivery boy algorithm.It will decrease charging radius,reduce the minimum required transmitted power,thereby saving the average charging energy consumption.The experimental results demonstrated that the less the number locations that the nodes existed,the more energy will be saved.