Assembly of a new Keggin polyoxometalate-templated complex using flexible 1,2-bis(imidazol-1′-yl)ethane ligand

A new compound, [{Cu^I(bim)}₄{SiW₁₂O₄₀}] (1) (bim?=?1,2-bis(imidazol-1′-yl)ethane), was hydrothermally synthesized and characterized by elemental analyses, IR, TG, and single-crystal X-ray diffraction. Compound 1 is an infinite 1-D chain composed of Cu-bim coordination polymers and [α-SiW₁₂O₄₀]^4? polyanions. The electrochemical and electrocatalytic behaviors of 1-modified carbon paste electrode (1-CPE) have been studied.     

Surflex-Dock 2.1: Robust performance from ligand energetic modeling,ring flexibility,and knowledge-based search

The Surflex flexible molecular docking method has been generalized and extended in two primary areas related to the search component of docking. First, incorporation of a small-molecule force-field extends the search into Cartesian coordinates constrained by internal ligand energetics. Whereas previous versions searched only the alignment and acyclic torsional space of the ligand, the new approach supports dynamic ring flexibility and all-atom optimization of docked ligand poses. Second, knowledge of well established molecular interactions between ligand fragments and a target protein can be directly exploited to guide the search process. This offers advantages in some cases over the search strategy where ligand alignment is guided solely by a “protomol” (a pre-computed molecular representation of an idealized ligand). Results are presented on both docking accuracy and screening utility using multiple publicly available benchmark data sets that place Surflex’s performance in the context of other molecular docking methods. In terms of docking accuracy, Surflex-Dock 2.1 performs as well as the best available methods. In the area of screening utility, Surflex’s performance is extremely robust, and it is clearly superior to other methods within the set of cases for which comparative data are available, with roughly double the screening enrichment performance.     

A full conformational space analysis of bilirubin

Ab initio methods were utilized in a gas-phase systematic conformational search of bilirubin conformers. The whole molecule was divided into four fragments. Most stable conformers of them were employed to build 196 conformers of the complete bilirubin molecule. Initial geometries were optimized using HF/3-21G level of theory and the minimum energy conformers were then reoptimized at B3LYP/6-31G(d) level. Ridge-tile conformer was the most stable one, in perfect agreement with X-ray data. We found that while tetrapyrrole backbone shows some flexibility, propionic acid side chains have a greater influence in bilirubin conformation because they can interact through different hydrogen bond patterns with the backbone and between them.     

Behaviour of fused silica capillaries subjected to gamma radiation. Part 2: Physical aspects

Five commercial varieties of uncoated fused silica capillary tubing used in high resolution gas chromatography were subjected to cobalt-60 gamma radiation. The advantages and superior performance of fused silica open tubular columns coated with OV-1 and subsequently immobilized or crosslinked in situ by radiation is reported in a previous paper in this Journal; however, in this investigation a loss in flexibility of irradiated capillaries was also noted. Quantitative measurements on flexibility were performed on specimens of irradiated fused silica capillaries, indicating that changes do indeed occur upon irradiation. Scanning electron micrographs also illustrate slight deterioration of the outer protective polyimide coating. Most surprisingly, it was also established that a variation does exist in the flexibility of the commercially available raw material studied.     

An entropy-based measurement of working time flexibility

Working time flexibility is of major concern to companies, and must be established by reaching arrangements with workers. Comparing flexibility arrangements is far from easy. Measures of flexibility that assume a probability distribution of future demand are not really measuring flexibility, but rather risk. We define a space of states made up of possible working hours over several periods, and apply three measures of flexibility to it: the proportion of feasible states, the average cost and a new entropy-based measure of flexibility (EMF). The EMF is based on Shannon’s entropy. We propose the use of three measures simultaneously for comparing the flexibility provided by a working time arrangement. Two examples are given: one that assesses the flexibility generated by using time accounts and overtime in a working time accounts (WTAs) modality, and one that compares the WTAs and hiring and firing (H&F) modalities.