A sequence and structural study of transmembrane helices

A comparison is made between the distribution of residue preferences, three dimensional nearest neighbour contacts, preferred rotamers, helix-helix crossover angles and peptide bond angles in three sets of proteins: a non-redundant set of accurately determined globular protein structures, a set of four-helix bundle structures and a set of membrane protein structures. Residue preferences for the latter two sets may reflect overall helix stabilising propensities but may also highlight differences arising out of the contrasting nature of the solvent environments in these two cases. The results bear out the expectation that there may be differences between residue type preferences in membrane proteins and in water soluble globular proteins. For example, the -branched residue types valine and isoleucine are considerably more frequently encountered in membrane helices. Likewise, glycine and proline, residue types normally associated with `helix-breaking' propensity are found to be relatively more common in membrane helices. Three dimensional nearest neighbour contacts along the helix, preferred rotamers, and peptide bond angles are very similar in the three sets of proteins as far as can be ascertained within the limits of the relatively low resolution of the membrane proteins dataset. Crossing angles for helices in the membrane protein set resemble the four helix bundle set more than the general non-redundant set, but in contrast to both sets they have smaller crossing angles consistent with the dual requirements for the helices to form a compact structure while having to span the membrane. In addition to the pairwise packing of helices we investigate their global packing and consider the question of helix supercoiling in helix bundle proteins.     

Theoretical study on the structure and property relationship of the cationic conjugated polyelectrolytes

A theoretical study using density functional theory was performed to understand the structure/property relationship of the cationic conjugated polyelectrolytes, poly[9,9-bis-(6′-N,N,N-trimethylammonium) hexyl] fluorene-alt-4,7-(2,1,3-benzothiadiazole)] (PFBT-X, where X = Br). The torsion angle between the fluorene and benzothiadiazole units in the PFBT monomer was found to substantially affect the structural and electronic properties of the cationic PFBT monomer. The changes of geometrical parameter, HOMO and LUMO energy levels, and band gap, as well as the absorption maximum are discussed in terms of the torsion in the PFBT monomer structure. For comparison, its neutral analogue, the monomer of poly(9,9-di-n-octylfluorene-alt-benzothiadiazole) (F8BT) was also studied. The length of conjugation backbone was also examined.     

Dispersion of silica nano-particles in sol-gel hybrid resins for fabrication of multi-scale hybrid nanocomposite

Multi-scale hybrid nanocomposites containing both ∼15 nm silica colloids and ∼2 nm oligosiloxanes in a methacryl polymer matrix were newly designed and fabricated. Colloidal silica sols were dispersed in methacryl oligosiloxanes nano-hybrid resins synthesized by sol-gel reaction of methacryloxypropylmethoxysilane and diphenylsilanediol. On the basis of TEM and SANS analyses, it was confirmed that the silica colloids were compatibly dispersed and different sizes of colloidal silica and oligosiloxanes co-exist in the solutions. Multi-scale hybrid nanocomposites fabricated by UV and thermal curing with incorporation of silica colloids in the nano-hybrid materials show enhanced mechanical and thermal characteristics.     

苯、甲苯、一氯代苯对含水卵磷脂液晶结构影响的SAXS研究

苯及其衍生物甲苯,一氯代苯都是重要的有机试剂和化工原料,也是对人体有害的有机物。为了了解这些有机试剂对处于生物液晶态的生物膜毒害的机理,我们以含水卵磷脂组成的液晶体系作为人工模型用小角X射线散射(SAXS)方法探讨这些有机试剂对它们结构的影响。关于苯或其它非极性有机介质与含水卵磷脂形成液晶体系及其结构模型前人有一些报导。     

Upper bound of Kähler angles on the β-symplectic critical surfaces

Let (M,g) be a Kähler surface and \mathrm{\Sigma } be a \beta-symplectic critical surface in M. If L_q\left(\mathrm{\Sigma }\right) is bounded for some q>3, then we give a uniform upper bound for the Kähler angle on \mathrm{\Sigma }. This bound only depends on M,q,\beta and the L_q functional of \mathrm{\Sigma }. For q>4, this estimate is known and we extend the scope of q.     

Evidence of a phase transition of RbHCO3 from high-resolution solid-state 13C and 87Rb NMR by comparison with KHCO3

A variable-temperature high-resolution 13C and 87Rb solid-state NMR study of powder rubidium hydrogencarbonate, RbHCO3, is presented for the first time. At ambient temperature, RbHCO3 is formed by centrosymmetric dimers linked by hydrogen bonds, but almost no information is available on this compound concerning proton disorder and the low-temperature phase. However, potassium hydrogencarbonate, KHCO3, which has an isomorphic structure for the high temperature phase, was well studied: it undergoes a non-ferroic, non-ferroelectric phase transition at Tc = 318 K between two monoclinic structures. The protons are disordered in an asymmetric double-well potential in the low-temperature phase, and the double-well potential becomes symmetric in the high-temperature phase. By comparison with recent solid-state NMR experimental results on KHCO3, we show that RbHCO3 undergoes a phase transition at Tc approximately 245 K, and give evidence that the proton dynamic disorder in both compounds is very similar.     

Novel fluorinated block copolymer architectures fuelled by atom transfer radical polymerization

Block copolymers based on poly(pentafluorostyrene), PFS, in various numbers and of different lengths, and polystyrene are prepared by atom transfer radical polymerization (ATRP). Di- and triblock copolymers with varying amounts of PFS were synthesized employing either 1-phenylethylbromide or 1,4-dibromoxylene as initiators for ATRP. Diverse bromo(ester) (macro)initiators were also devised and involved in the formulation of fluorinated pentablock as well as amphiphilic triblock copolymers with a central polyether segment. Amphiphilic star-shaped fluoropolymers, hydrophobic fluorinated nanoparticles, or segmented fluorinated star-shaped block copolymers are further designed by use of different multifunctional initiators. The composition of the novel materials with PFS is determined by combination of SEC and ¹H NMR. Glass transition temperatures and thermal stabilities of the hydrophobic star-shaped PFSs on a six arm dipentaerythritol core are investigated in a wide range of molecular masses and further discussed.     

The effect of interface deformation due to gravity on line tension measurement by the capillary rise in a conical tube

Much research has been done on line tension measurement and interpretation, and attempts have also been made to measure line tension with simple, cheap and reliable methods that do not require excessive sophistication. Of particular interest is the method of determining line tensions of solid–liquid–vapor systems from the capillary rise in a conical tube. This simple and relatively inexpensive method gives line tension values comparable to those reported in the literature obtained via highly sophisticated instruments or techniques such as the well known axisymmetric drop shape analysis technique. The absolute value of line tension obtained using the conical tube method and assuming a spherical liquid–vapor interface is larger but of the same order of magnitude (1 μJ m⁻¹) as that reported in the literature. A theoretical analysis presented herein shows that by including the deformation of the liquid–vapor interface due to gravity in the conical capillary analysis, the line tension value inferred from the experimental data is reduced by approximately 50% and compares better with values in the literature obtained using other sophisticated methods. Thus a relatively simple, cheap, accurate and reliable method of line tension measurement has been advanced.     

Paracrystalline order in polymers

Summary A brief review of one and three dimensional models of paracrystalline superstructures in polymers, as used for analysing the small angle scattering, is given.

---

Zusammenfassung Es wird ein knapper überblick über die bei der Analyse der Kleinwinkelstreuung von Polymeren verwendeten einund dreidimensionalen Modelle der Überstruktur gegeben.

     

Tetraalkylammonium bromides in methanol: Small angle neutron scattering and vapor pressure measurements

Vapor pressure measurements and small angle scattering (SANS) experiments are reported and discussed for bispiperidinium (BP) bromide and n-tetrapentylammonium bromide solutions in methanol at 25°C. The BP⁺ ion which may be considered as a tetraalkylammonium (TAA) ion with pairwise connected alkyl chains, is used for the study of the effects due to flexible TAA alkyl chains. SANS intensities are calibrated with the help of the precise osmotic coefficients from the vapor pressure measurements.