Placevent: An algorithm for prediction of explicit solvent atom distribution—Application to HIV‐1 protease and F‐ATP synthase

We have created a simple algorithm for automatically predicting the explicit solvent atom distribution of biomolecules. The explicit distribution is coerced from the three‐dimensional (3D) continuous distribution resulting from a 3D reference interaction site model (3D‐RISM) calculation. This procedure predicts optimal location of solvent molecules and ions given a rigid biomolecular structure and the solvent composition. We show examples of predicting water molecules near the KNI‐272 bound form of HIV‐1 protease and predicting both sodium ions and water molecules near the rotor ring of F‐adenosine triphosphate (ATP) synthase. Our results give excellent agreement with experimental structure with an average prediction error of 0.39–0.65 Å. Further, unlike experimental methods, this method does not suffer from the partial occupancy limit. Our method can be performed directly on 3D‐RISM output within minutes. It is extremely useful for examining multiple specific solvent–solute interactions, as a convenient method for generating initial solvent structures for molecular dynamics calculations, and may assist in refinement of experimental structures. © 2012 Wiley Periodicals, Inc.     

Preparation and evaluation of an ion imprinted sol–gel material for selective solid-phase extraction of Ni(II)

An ion imprinted silica sorbent was prepared using a sol–gel process for selective extraction of Ni(II) ions from water samples. Bis(dibenzoylmethanto)nickel(II) complex was used as template; phenyltrimethoxysilane and 3-aminopropyltriethoxysilane as functional monomers and tetraethylorthosilicate as reticulating agent. The material was packed in solid-phase extraction (SPE) column. The effect of sampling volume, elution conditions, sample pH and sample flow rate on the extraction of Ni ions from water samples were studied. The relative selectivity coefficients of imprinted sorbent for Ni(II)/Co(II), Ni(II)/Cu(II) and Ni(II)/Cd(II) were 23.7, 30.3 and 24.4, times greater than non-imprinted sorbent, respectively. The relative standard deviation of the eight replicate determinations of Ni(II) was 4.2%. The detection limit was 0.9 µg L^?1 using flame atomic absorption spectrometry. The developed method was successfully applied to the determination of trace nickel in water samples.     

Environmental Determination of Alkylphenol Polyethoxylate Refractory Residues Using Mass Spectrometric Techniques

Abstract

The use of methane chemical ionisation GC/MS gave satisfactory results when applied to environmental analysis of halogenated octylphenol polyethoxylates residues. In addition the selected ion monitoring GC/MS technique has been successfully applied for simulataneous qualitative and quantitative determination of some refractory metabolites of nonylphenol polyethoxylates in secondary sewage effluent and surface waters.     

Determination of lead (II) ion by highly selective and sensitive lead (II) membrane electrode based on 2-(((E)-2-((E)-1-(2-hydroxyphenyl) methyliden)hydrazono)metyl)phenol

A PVC (poly vinyl chloride) membrane electrode for lead ion based on 2-(((E)-2-((E)-1-(2-hydroxyphenyl)methyliden)hydrazono)metyl)phenol (HMHMP) as a membrane carrier was prepared. This electrode exhibited linear response with Nernstian slope of 29.2?±?0.2?mV per decade within the concentration range of 2.0?×?10^?7–1.0?×?10^?1?M lead ion. The limit of detection, as determined from the intersection of the extrapolated linear segments of the calibration plot, was 8.0?×?10^?8 M. The electrode exhibited high selectivity for Pb (II). The response time of the electrode was about 5–10?s for different concentrations. The electrode is suitable for use in aqueous solutions in a pH range of 5.0–7.5. It was used as an indicator electrode in a titration of Pb (II) with chromate at constant pH. This electrode was used for the determination of lead in ore samples, and the results were in agreement with those obtained with an atomic absorption spectroscopy (AAS) method. Also lead selective electrode was used for monitoring of lead in spiked samples of the Zayanderud River and waste water by the potentiometry technique.     

用于高性能钠离子电容器的高氮掺杂多孔碳纳米纤维的简易合成

选择合适的生物质材料是获得功能碳材料的有效途径之一。通过柠檬酸钾和三聚氰胺一步热解法制备高氮掺杂多孔碳纳米纤维(NPCF)。在电流密度为0.1和1.0 A·g^-1时,NPCF电极的容量分别为218和140 mAh·g^-1。同时,具有NPCF阳极的钠离子电容器(SIC)在1.0 A·g^-1下表现出优异的倍率性能和超长的使用寿命,可循环超过2 500次。     

磷脂液相二次离子质谱分析中的分子离子簇

对3种极性头不同的磷脂DMPG、DMPC、DMPE的液相二次离子质谱分析中出现 的分子离子簇现象进行了系统的研究。结果表明，虽然分子离子簇的形成与许多因素有关， 如PH值、离子强度等，但起决定作用的是样品在底物中的浓度，浓度增大有利于分子离子簇 的形成。研究还发现，由不同种类磷脂分子形成的分子离子簇峰明显高于由同种磷脂分子所 形成的分子离子簇峰，指出异种磷脂分子间的簇离子形成能力高于同种磷脂分子。此外还讨 论了磷脂分子在离子源条件下的稳定性、裂解规律及相互作用等。结果表明，本实验所选用 的磷脂分子在LSIMS条件下是稳定的，均能得到较强的分子离子峰，其主要碎片峰是磷酰键断裂而产生的碎片离子峰。     

巴洛沙星-Tb^3＋-ATP荧光体系的建立及其分析应用

在二元配合物巴洛沙星-Tb^3＋中加入ATP,Tb^3＋在其特征波长545nm处的荧光强度增强,据此建立了新的巴洛沙星Tb^3＋-ATP荧光体系。在最优化实验条件下,增强的荧光强度与ATP的浓度呈良好的线性关系,线性范围为2．0×10^-6-3．0×10^-5mol／L,检出限为8．0×10^-7mol／L。详细的机理研究表明,ATP能与巴洛沙星-Tb^3＋形成大的三元络合物荧光体系。新建立的荧光体系成功地应用于ATP注射液中ATP的定量检测。对不同批次ATP注射液进行加标回收试验,回收率为101％-106％,测定结果的相对标准偏差为1．1％-1．9％（n=5）。     

基于离子交换和表面引发接枝聚合制备阴离子表面印迹材料及其识别特性研究

建立了一种新的离子表面印迹(IIP)方法. 使用偶联剂γ-氨丙基三甲氧基硅烷(AMPS)对微米级硅胶微粒进行表面改性, 制得表面含有氨基的改性硅胶AMPS-SiO₂. 凭借离子交换作用, 阳离子单体甲基丙烯酰氧乙基三甲基氯化铵(DMC)结合在模板离子磷酸根周围; 改性硅胶AMPS-SiO₂表面的氨基与溶液中的过硫酸盐构成氧化还原引发体系, 使DMC及交联剂N,N'-亚甲基双丙烯酰胺(MBA)在硅胶微粒表面发生接枝交联聚合, 从而实现了磷酸根离子的表面印迹, 制得了阴离子表面印迹材料IIP-PDMC/SiO₂. 采用静态与动态两种方法, 考察研究了IIP-PDMC/SiO₂对PO₄^3-离子的识别特性与结合性能. 研究结果表明, 离子表面印迹材料IIP-PDMC/SiO₂对PO₄^3-离子具有特异的识别选择性与优良的结合亲和性, 相对于对比离子高锰酸根离子, IIP-PDMC/SiO₂对PO₄^3-离子的识别选择性系数为9.58.     

Cu2+对联苯甲醛修饰的树状大分子聚酰胺-胺荧光性能的影响

采用小分子联苯甲醛(BPA)分别修饰第一和第二代树状大分子聚酰胺-胺(PAMAM), 合成了2种PAMAM的修饰产物G1-BPA4和G1-BPA8. 利用IR, 1H NMR及MALDI-TOF MS等手段表征了2种产物的结构, 研究了Cu2+浓度对其荧光性能的影响. 结果表明, 在一定的浓度范围内, 作为常见荧光猝灭剂的Cu2+能使2种产物的荧光均显著增强.     

Ferrocene and Ferricenium Ion as Versatile Photometric Titrants of H2O2 and D-Glucose in the Presence of Peroxidase and Glucose Oxidase. A Ferrocene-Peroxidase Stairway #

Abstract

Hydrogen peroxide can routinely be determined in the presence of ferrocene (FcH) and horseradish peroxidase by monitoring at 617 nm the enzymatically produced ferricenium dye. In contrast, D-glucose can be assayed by following the fading of the ferricenium dye FcH⁺PF₆ ^? in the presence of glucose oxidase. The change in absorbance in both cases corresponds to the amount of analyte. viz. H₂O₂ or D-glucose, in solution. The routine is very simple, invariant to the concentrations of both ferrocenes/ferricenium salt and enzyme and allows numerous “one pot” measuremeats with the detection limit of 10^?4 M for both the analytes. It takes 2–4 and 5–10 min to accomplish one analysis of H₂O₂ and D-glucose in the presence of peroxidase and glucose oxidase, respectively.