Total synthesis of the polyenoyltetramic acid polycephalin C

The total synthesis of the polyenoyltetramic acid polycephalin C is described. Key steps of the synthesis include a double Swern oxidation, double Takai reaction and a double Stille reaction. In addition, the absolute stereochemistry of the ring junction has been determined by synthesis of both isomers and comparison of their CD spectra with natural polycephalin C.     

A Study of the Hydration of Lime-Pozzolan Binders

DTA/TG and TG/DTG thermal studies and XRD investigations were carried out on pastes of lime-pozzolan binders to examine the relative hydration process. The binders were prepared with two natural pozzolans and hydrated lime, mixed together in different proportions. The main hydrated phases formed in the pastes are calcium silicate hydrate (CSH) and mono-carboaluminate. The growth of CSH was greater for the paste of the pozzolan richer in reactive constituents. For pastes with a higher lime/pozzolan ratio, a slowing of the formation of CSH was observed, while the formation of monocarboaluminate was more intense. The calcium hydroxide contents of the pastes obtained by thermogravimetric analysis made it possible to determine the pozzolanic activities of the two pozzolans under examination. The mortars for the various lime-pozzolan binders displayed characteristic hardening. This revised version was published online in July 2006 with corrections to the Cover Date.     

Configurational analysis of the natural product passifloricin A by quantum mechanical C NMR GIAO chemical shift calculations

Quantum chemical calculations at mPW1PW91 level, with full geometry optimization, using the 6-31g(d) basis set, and GIAO (gauge including atomic orbitals) ¹³C NMR chemical shifts using the 6-31g(d,p) basis set, are here utilized as a support to define the configurational features of the natural product passifloricin A, whose previously proposed relative configuration has been recently shown, by synthetic studies, to be incorrect. This study suggests that the relative stereostructure for passifloricin A corresponds to the δ-lactone of the (5R,7R,9S,11R)-tetrahydroxyhexacos-2-enoic acid.     

Towards the synthesis of [15]-membered stevastelins through the 2,3-epoxy analogues

A synthetic approach to the [15]-membered stevastelins, a novel class of immunosuppressant agents, is reported based on a macrolactamization route to the 2,3-epoxy derivative 6. The synthesis of this compound was achieved via a stereoselective epoxidation of the allylic alcohol 13, followed by a coupling reaction with a variety of peptide derivatives to give the epoxy peptides 7-10. After an extensive study of cyclizations with these precursors, the best result was achieved with the macrolactamization of 8 in the presence of DEPC, to obtain the epoxy cyclic depsipeptide 6 in 42% yield. From this product, an epoxy analogue of stevastelin B, compound 27, was prepared. Finally, the synthesis of the natural product was attempted through the opening of the oxirane ring contained in 6 and 26, with a variety of methyl cuprate reagents, but without success.     

Thermodynamics of formation of nitrogen bases and d-ribose from mineral substances in light of the problem of origination of simplest elements of living matter

The paper represents a further development of our hydrate hypothesis of simplest living matter origination (SLMO) from inorganic and simplest organic mineral substances. It is supposed that the sources of SLMO are simplest aliphatic hydrocarbons, niters, and phosphates. Thermodynamic calculations demonstrating a principal possibility for simultaneous syntheses of different nitrogen bases, d-ribose, and desoxy-d-ribose from these source substances are presented. The most probable principal mechanism of SLMO and the principal conditions necessary for realization of the proposed chemism of SLMO in the framework of the proposed mechanism are considered. A principal means for testing the hypothesis is proposed.     

The α-β inversion in submilligram particles of natural quartz

The bacground to the supposed development of the ‘Beilby layer’ on fine-grinding quartz is briefly reviewed. It is shown, using single crucible thermal analysis and sub-milligram DTA, that grinding quartz can cause a dispersion of the α-β inversion over a temperature range of several degrees; this is a crystallographic effect rather than an impurity effect. The sub-milligram DTA apparatus used is described and some thermal effects, such as impurity zoning, are illustrated.     

Catalytic Active Site for NO Decomposition Elucidated by Surface Science and Real Catalyst

Comprehensive studies combining surface science and real catalyst were performed to get further insight into catalytic active site and reaction mechanism for NO decomposition over supported palladium and cobalt oxide-based catalysts. On palladium single-crystal model catalysts, adsorption, dissociation and desorption behavior of NO was found to be closely related to the surface structures, the stepped surface palladium being active for dissociation of NO. In accordance with this result, the activity of powder Pd/Al₂O₃ catalysts for NO decomposition was directly related to the number of step sites exposed on the surface, suggesting that the step sites act as the catalytic active site for NO decomposition on Pd/Al₂O₃. NO decomposition over cobalt oxide was found to be significantly promoted by addition of alkali metals. Surface science study and catalyst characterization led to the same conclusion that the interface between the alkali metal and Co₃O₄ serves as the catalytic active site. From the results of in situ Fourier transform infrared (FT-IR) spectroscopy and isotopic transient kinetic analysis, a reaction mechanism was proposed in which the reaction is initiated by NO adsorption onto alkali metals to form NO₂⁻ species and then NO₂⁻ species react with the adsorbed NO species to form N₂ over the interface between the alkali metal and Co₃O₄.     

Protein-reactive natural products

Researchers in the post-genome era are confronted with the daunting task of assigning structure and function to tens of thousands of encoded proteins. To realize this goal, new technologies are emerging for the analysis of protein function on a global scale, such as activity-based protein profiling (ABPP), which aims to develop active site-directed chemical probes for enzyme analysis in whole proteomes. For the pursuit of such chemical proteomic technologies, it is helpful to derive inspiration from protein-reactive natural products. Natural products use a remarkably diverse set of mechanisms to covalently modify enzymes from distinct mechanistic classes, thus providing a wellspring of chemical concepts that can be exploited for the design of active-site-directed proteomic probes. Herein, we highlight several examples of protein-reactive natural products and illustrate how their mechanisms of action have influenced and continue to shape the progression of chemical proteomic technologies like ABPP.     

Theoretical study of 3d‐metal mononitrides using DFT method

3d‐Metal mononitrides are studied using the density functional theory method. The lowest spin state for these dimers is obtained using the B3LYP hybrid functional with the 6‐311+G* basis set. The equilibrium geometries, vibrational frequencies, binding energies, Mulliken, and natural orbital population analysis charges, natural orbital electronic configuration, electron affinity, and ionization potential are obtained. Mulliken as well as natural orbital population analysis charges indicate that for all dimers, in cations most of the positive charge localized on the transition metal atom where in anions most of the negative charge localized on nitrogen atom. The binding energies for 3d‐metal mononitrides are higher than those for monocarbides and monoxides. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Thermotropic Liquid Crystals Based on Extended 2,5‐Disubstituted‐1,3,4‐Oxadiazoles: Structure–Property Relationships,Variable‐Temperature Powder X‐ray Diffraction,and Small‐Angle X‐ray Scattering Studies

A class of extended 2,5‐disubstituted‐1,3,4‐oxadiazoles R¹‐C₆H₄‐{OC₂N₂}‐C₆H₄‐R² (R¹=R²=C₁₀H₂₁O 1 a , p‐C₁₀H₂₁O‐C₆H₄‐C?C 3 a , p‐CH₃O‐C₆H₄‐C?C 3 b ; R¹=C₁₀H₂₁O, R²=CH₃O 1 b , (CH₃)₂N 1 c ; F 1 d ; R¹=C₁₀H₂₁O‐C₆H₄‐C?C, R²=C₁₀H₂₁O 2 a , CH₃O 2 b , (CH₃)₂N 2 c , F 2 d ) were prepared, and their liquid‐crystalline properties were examined. In CH₂Cl₂ solution, these compounds displayed a room‐temperature emission with λ_max at 340–471 nm and quantum yields of 0.73–0.97. Compounds 1 d , 2 a – 2 d , and 3 a exhibited various thermotropic mesophases (monotropic, enantiotropic nematic/smectic), which were examined by polarized‐light optical microscopy and differential scanning calorimetry. Structure determination by a direct‐space approach using simulated annealing or parallel tempering of the powder X‐ray diffraction data revealed distinctive crystal‐packing arrangements for mesogenic molecules 2 b and 3 a , leading to different nematic mesophase behavior, with 2 b being monotropic and 3 a enantiotropic in the narrow temperature range of 200–210 °C. The structural transitions associated with these crystalline solids and their mesophases were studied by variable‐temperature X‐ray diffractometry. Nondestructive phase transitions (crystal‐to‐crystal, crystal‐to‐mesophase, mesophase‐to‐liquid) were observed in the diffractograms of 1 b, 1 d , 2 b, 2 d , and 3 a measured at 25–200 °C. Powder X‐ray diffraction and small‐angle X‐ray scattering data revealed that the structure of the annealed solid residue 2 b reverted to its original crystal/molecular packing when the isotropic liquid was cooled to room temperature. Structure–property relationships within these mesomorphic solids are discussed in the context of their molecular structures and intermolecular interactions.