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931.
Force-constant-decayed anisotropic network model: An improved method for predicting RNA flexibility 下载免费PDF全文
Wei-Bu Wang 《中国物理 B》2022,31(6):68704-068704
RNA is an important biological macromolecule, which plays an irreplaceable role in many life activities. RNA functions are largely determined by its tertiary structure and the intrinsic dynamics encoded in the structure. Thus, how to effective extract structure-encoded dynamics is of great significance for understanding RNA functions. Anisotropic network model (ANM) is an efficient method to investigate macromolecular dynamical properties, which has been widely used in protein studies. However, the performance of the conventional ANM in describing RNA flexibility is not as good as that on proteins. In this study, we proposed a new approach, named force-constant-decayed anisotropic network model (fcd-ANM), to improve the performance in investigating the dynamical properties encoded in RNA structures. In fcd-ANM, nucleotide pairs in RNA structure were connected by springs and the force constant of springs was decayed exponentially based on the separation distance to describe the differences in the inter-nucleotide interaction strength. The performance of fcd-ANM in predicting RNA flexibility was evaluated using a non-redundant structure database composed of 51 RNAs. The results indicate that fcd-ANM significantly outperforms the conventional ANM in reproducing the experimental B-factors of nucleotides in RNA structures, and the Pearson correlation coefficient between the predicted and experimental nucleotide B-factors was distinctly improved by 21.05% compared to the conventional ANM. Fcd-ANM can serve as a more effective method for analysis of RNA dynamical properties. 相似文献
932.
本文研究滚装码头混合泊位分配和劳动力分配的联合调度优化问题。首先,考虑潮汐时间窗约束、装卸劳动力约束、泊位缆桩分布约束以及泊位不规则布局因素,建立以最小化船舶总服务时间为目标的混合整数规划模型。其次,采用内外嵌套算法设计策略,提出求解该类问题的组合算法。其中,外层是多种群并行进化的遗传算法,生成多种船舶计划顺序,内层为基于规则的启发式算法,用于计算给定计划顺序的目标函数值。然后,基于实际运营数据,生成多组不同规模的算例进行全面数值实验,结果表明所提出的算法可在10分钟内求解包含50艘船、100个泊段的算例。最后,开展基于真实滚装码头运营实例的案例分析,对所提模型和算法在实际码头调度问题中的适用性与高效性进行验证。 相似文献
933.
934.
本文提出了一种新的带有时间幂次项的灰色GM(1,1,k,k2)模型,给出了其灰微分方程和白化微分方程基本形式。基于最小二乘法获得了该模型参数估计值,并推导了该模型时间响应函数。鉴于GM(1,1,k,k2)模型灰微分方程与白化微分方程之间存在跳跃关系,首先对灰微分方程的背景值进行了优化,并推导了优化后的背景值计算公式。为了克服初始值的影响,根据误差平方和最小,进一步优化了GM(1,1,k,k2)模型时间响应函数。最后,该优化后的GM(1,1,k,k2)模型被应用于软土地基沉降预测,获得了较好的模拟预测效果,说明模型是可行的。 相似文献
935.
现有三参数离散灰色预测模型的累加阶数取值范围局限于正实数,导致模型建模能力和作用空间受限。为此,论文首先引入实数域统一灰色生成算子;然后,基于统一灰色生成算子构造了新型三参数离散灰色预测模型,实现了其阶数从正实数到全体实数的拓展与优化,从而使得新型模型具备挖掘时序数据积分特性与差异信息的双重功能;最后,将该新模型应用于某装甲装备维修经费的建模,结果显示其精度优于其它同类灰色模型。本研究成果对完善灰色算子基础理论及提高灰色预测模型建模能力具有重要价值。 相似文献
936.
节能服务企业效率对于推动节能服务产业发展和确保国家“双碳”目标实现具有重要意义。运用三阶段SBM模型,对2020年60家中国节能服务上市企业的综合效率进行实证研究,并分析效率的影响因素。研究结果表明,经济发展水平对综合效率具有双重影响,合适的产业结构和较高的投入资本回报率有利于综合效率提升,而政府补贴与企业存续时间制约了综合效率改进;剔除环境因素与随机误差影响后,多数企业综合效率下降,整体效率偏低;提高规模效率是提升综合效率的关键,且绝大部分企业处于规模收益递增状态。研究最后提出创新补贴方式、建立企业认证制度、开展综合能源服务和推动企业间兼并重组等可行建议,以提升节能服务企业的综合效率。 相似文献
937.
In this paper, a quantum cascade laser (QCL) design is proposed based on GaAs/AlGaAs material system, which simultaneously operates at three widely separated wavelengths ( and ). In the design, all the wavelength radiations are achieved by the engineering of the electronic spectrum via the quantum-well widths and the applied electric field in a single active region within a same waveguide. The mid-infrared (mid-IR) wavelengths are obtained by adoption a dual-upper-state active region, and the proposed design aims to use both the mid-IR radiations as the coherent deriving fields to populate the upper THz lasing state to aid the THz-laser population inversion via optical pumping instead of direct electrical injection. A detailed analysis of electronic transport in the structure is carried out using a multi-level rate-equation model. The results show that the proposed structure offers an alternative approach to room temperature THz generation in QCLs. 相似文献
938.
This paper investigates the channel model for multiple-input multiple-output (MIMO) communication systems in high speed railway (HSR) networks. Specially, a three-dimensional (3D) confocal stochastic geometry ellipsoid model is proposed for modeling the MIMO channels. Normalized space–time correlation function(ST CF), Spatial cross correlation function (CCF) and level crossing rate (LCR) of both theoretical and simulation model are have been derived and analyzed. As a 3D GBSM, the proposed confocal ellipsoid model has lower correlation in spatial cross-correlation function (CCF) compared with that of the corresponding two-dimensional (2D) ellipse model. Measurement data of different HSR scenarios verify the applicability of the confocal ellipsoid model. 相似文献
939.
Consensus,Polarization and Hysteresis in the Three-State Noisy q-Voter Model with Bounded Confidence
In this work, we address the question of the role of the influence of group size on the emergence of various collective social phenomena, such as consensus, polarization and social hysteresis. To answer this question, we study the three-state noisy q-voter model with bounded confidence, in which agents can be in one of three states: two extremes (leftist and rightist) and centrist. We study the model on a complete graph within the mean-field approach and show that, depending on the size q of the influence group, saddle-node bifurcation cascades of different length appear and different collective phenomena are possible. In particular, for all values of , social hysteresis is observed. Furthermore, for small values of , disagreement, polarization and domination of centrists (a consensus understood as the general agreement, not unanimity) can be achieved but not the domination of extremists. The latter is possible only for larger groups of influence. Finally, by comparing our model to others, we discuss how a small change in the rules at the microscopic level can dramatically change the macroscopic behavior of the model. 相似文献
940.
Testing predictability is known to be an important issue for the balanced predictive regression model. Some unified testing statistics of desirable properties have been proposed, though their validity depends on a predefined assumption regarding whether or not an intercept term nevertheless exists. In fact, most financial data have endogenous or heteroscedasticity structure, and the existing intercept term test does not perform well in these cases. In this paper, we consider the testing for the intercept of the balanced predictive regression model. An empirical likelihood based testing statistic is developed, and its limit distribution is also derived under some mild conditions. We also provide some simulations and a real application to illustrate its merits in terms of both size and power properties. 相似文献