Conformational dependence of the intrinsic acidity of the aspartic acid residue sidechain in N-acetyl- -aspartic acid-N′-methylamide

The sidechain conformational potential energy hypersurfaces (PEHS) for the γ_L, β_L, α_L, and α_D backbone conformations of N-acetyl- -aspartate-N′-methylamide were generated. Of the 81 possible conformers initially expected for the aspartate residue, only seven were found after geometric optimizations at the B3LYP/6-31G(d) level of theory. No stable conformers could be located in the δ_L, _L, γ_D, δ_D, and _D backbone conformations. The ‘adiabatic’ deprotonation energies for the endo and exo forms of N-acetyl- -aspartic acid-N′-methylamide were calculated by comparing their optimized relative energies against those found for the seven stable conformers of N-acetyl- -aspartate-N′-methylamide. Sidechain conformational PEHSs were also generated for the estimation of ‘vertical’ deprotonation energies for both endo and exo forms of N-acetyl- -aspartic acid-N′-methylamide. All backbone–sidechain (N–H⁻O–C) and backbone–backbone (N–HO=C) hydrogen bond interactions were analyzed. A total of two backbone–backbone and four backbone–sidechain interactions were found for N-acetyl- -aspartate-N′-methylamide. The deprotonated sidechain of N-acetyl- -aspartate-N′-methylamide may allow the aspartyl residue to form strong hydrogen bond interactions (since it is negatively charged) which may be significant in such processes as protein–ligand recognition and ligand binding. As a primary example, the molecular geometry of the aspartyl residue may be important in peptide folding, such as that in the RGD tripeptide.     

Self‐Assembly of Dialkyltin Moieties and Mercaptobenzoic Acid into Macrocyclic Complexes with Hydrophobic “Pseudo‐Cage” or Double‐Cavity Structures: Supramolecular Infrastructures Involving Intermolecular C?H⋅⋅⋅S Weak Hydrogen Bonds and π–π Interactions

Four novel organotin complexes of two types—[R₂Sn(o‐SC₆H₄CO₂)]₆ (R=Me, 1 ?H₂O; nBu, 2 ) and {[R₂Sn(m‐CO₂C₆H₄S)R₂Sn(m‐SC₆H₄CO₂)SnR₂]O}₂ (R=Me, 3 ; nBu, 4 )—have been prepared by treatment of o‐ or m‐mercaptobenzoic acid and the corresponding R₂SnCl₂ (R=Me, nBu) with sodium ethoxide in ethanol (95 %). All the complexes were characterized by elemental analysis, FT‐IR and NMR (¹H, ¹³C, ¹¹⁹Sn) spectroscopy, TGA, and X‐ray crystallography diffraction analysis. The molecular structure analyses reveal that both 1 and 2 are hexanuclear macrocycles with hydrophobic “pseudo‐cage” structures, while 3 and 4 are hexanuclear macrocycles with double‐cavity structures. Furthermore, the supramolecular structure analyses show that looser and more intriguing supramolecular infrastructures were also found in complexes 1 – 4 , which exist either as one‐dimensional chains of rings or as two‐dimensional networks assembled from the organometallic subunits through intermolecular C? H???S weak hydrogen bonds (WHBs) and π–π interactions.     

Affinity interactions between phenylboronic acid-carrying self-assembled monolayers and flavin adenine dinucleotide or horseradish peroxidase

A method is provided for the recognition of glycated molecules based on their binding affinities to boronate-carrying monolayers. The affinity interaction of flavin adenine dinucleotide (FAD) and horseradish peroxidase (HRP) with phenylboronic acid monolayers on gold was investigated by using voltammetric and microgravimetric methods. Conjugates of 3-aminophenylboronic acid and 3,3'-dithiodipropionic acid di(N-hydroxysuccinimide ester) or 11-mercaptoundecanoic acid were prepared and self-assembled on gold surfaces to generate monolayers. FAD is bound to this modified surface and recognized by a pair of redox peaks with a formal potential of -0.433 V in a 0.1 M phosphate buffer solution, pH 6.5. Upon addition of a sugar to the buffer, the bound FAD could be replaced, indicating that the binding is reversible. Voltammetric, mass measurements, and photometric activity assays show that the HRP can also be bound to the interface. This binding is reversible, and HRP can be replaced by sorbitol or removed in acidic solution. The effects of pH, incubation time, and concentration of H(2)O(2) were studied by comparing the catalytic reduction of H(2)O(2) in the presence of the electron-donor thionine. The catalytic current of the HRP-loaded electrode was proportional to HRP concentrations in the incubation solution in the range between 5 microg mL(-1) and 0.1 mg mL(-1) with a linear slope of 3.34 microA mL mg(-1) and a correlation coefficient of 0.9945.     

Cover Picture: Trimeric Perfluoro‐ortho‐phenylenemercury: A Versatile Lewis Acidic Host (Chem. Eur. J. 21/2003)

The cover picture shows how trimeric perfluoro‐ortho‐phenylene mercury (center), one of the simplest trifunctional Lewis acidic hosts, interacts with organic molecules to afford various adducts. The planarity of this trinuclear complex as well as its overall polarizability compounded with relativistic effects at mercury permits the occurrence of noncovalent interactions and accounts for the tendency of this compound to form cofacial dimers as observed in the structure of the acetone adduct (top left). With a triply coordinated acetone molecule, the structure of this adduct also substantiates the cooperative effects that arise from the proximity and accessibility of the mercury centers. The complexation of arenes, such as benzene (bottom left) and naphthalene (bottom right), also occurs and leads to the formation of binary stacks in which the arene establishes multiple linkages with the mercury centers of the trifunctional Lewis acids. In addition to displaying unusual coordination environment, the arene units present in those stacks exhibit remarkable phosphorescent properties. For more details, see the paper by F. P. Gabbaï, R. E. Taylor, and M. R. Haneline on p. 5188 ff.     

Design and self-assembly of ditopic and tetratopic cavitand complexes

The self-assembly of open ditopic and tetratopic cavitand complexes has been investigated by using monofunctionalized cavitand ligands and suitable metal precursors. In the case of ditopic complexes, self-assembly protocols, leading exclusively to the formation of both thermodynamically stable cis-Pt square-planar complexes 8 and 9 and the kinetically inert fac-Re octahedral complex 14, have been elaborated. The use of cis-[Pt(CH3)CN)2Cl2] as metal precursor led to the formation of monotopic trans-10 and ditopic trans-11 cavitand complexes, while cis-[Pt(dmso)2Cl2] afforded both cis-13 and trans-11 isomers. The self-assembly of tetratopic cavitand complexes has been achieved by using mononuclear [Pd(CH3CN)4(BF4)2] and dinuclear [M2(tppb)(OTf)4] (19: M = Pt; 20: M = Pd) metal precursors. Only the tetratopic dinuclear complexes 21 and 22 were stable. The ligand configuration with two phosphorus and two cavitand ligands at the metal centers is the most appropriate to build tetratopic cavitand complexes with sufficient kinetic stability.     

Solvent Effects on the Structure-Activity Relationship of Pharmacological Active 3-Substituted-5,5-Diphenylhydantoins

Absorption spectra of eight 3-substituted-5,5-diphenylhydantoins have been recorded in fourteen solvents in the range 200–400 nm. The effect of solvent dipolarity/polarizability and solvent/solute hydrogen bonding interactions are analyzed by means of the linear solvation energy relationship (LSER) concept proposed by Kamlet and Taft. The lipophilic activity of the investigated hydantoins was estimated by the calculation of log ₁₀ P values with the Advanced Chemistry Development Software. The calculated values of log ₁₀ P were correlated with the ratio of the contributions of specific solvent interactions, and, by employing the linear dependence thus obtained, the pharmacological activity of the studied hydantoin derivatives is discussed.     

Some ruthenium complexes containing cyanocarbon ligands: syntheses, structures and extent of electronic communication in binuclear systems

The preparation of several ruthenium complexes containing cyanocarbon anions is reported. Deprotonation (KOBu^t) of [Ru(NCCH₂CN)(PPh₃)₂Cp]PF₆ (1) gives Ru{NCCH(CN)}(PPh₃)₂Cp (2), which adds a second [Ru(PPh₃)₂Cp]⁺ unit to give [{Ru(PPh₃)₂Cp}₂(μ-NCCHCN)]⁺ (3). Attempted deprotonation of the latter to give the μ-NCCCN complex was unsuccessful. Similar chemistry with tricyanomethanide anion gives Ru{NCC(CN)₂}(PPh₃)₂Cp (4) and [{Ru(PPh₃)₂Cp}₂{μ-NCC(CN)CN}]PF₆ (5), and with pentacyanopropenide, Ru{NCC(CN)C(CN)C(CN)₂}(PPh₃)₂Cp (6) and [{Ru(PPh₃)₂Cp}₂{μ-NCC(CN)C(CN)C(CN)CN}]PF₆ (7). The Ru(dppe)Cp* analogues of 6 and 7 (8 and 9) were also prepared. Thermolysis of 6 (refluxing toluene, 12 h) results in loss of PPh₃ and formation of the binuclear cyclic complex {Ru(PPh₃)Cp[μ-NC{C(CN)C(CN)₂}CN]}₂ (10). The solid-state structures of 2-4 and 8-10 have been determined and the nature of the isomers shown to be present in solutions of the binuclear cations 7 and 9 by NMR studies has been probed using Hartree-Fock and density functional theory.     

Effect of pH on the interfacial adsorption activity of pulmonary surfactant

The effect of pH on the interfacial adsorption activity of pulmonary surfactant was examined. Measurements of the surface tension were made in a Wilhelmy-like surface microbalance specially designed to assay small volumes of hypophase in thermostatically controlled conditions. Alkaline pH caused a significant decrease of the surface activity of both pulmonary surfactant and a lipid extract from surfactant (LES) (containing all of the lipids and surfactant protein-B (SP-B) and surfactant protein-C (SP-C) hydrophobic surfactant proteins, but lacking surfactant protein-A). The pK calculated from the change of surface activity versus pH was 9.18±0.26 and 9.27±0.31 for pulmonary surfactant and LES, respectively. The results from this study support the idea that electrostatic interactions between basic residues of SP-B and SP-C and negatively charged surfactant phospholipids could be important for the interfacial adsorption activity of pulmonary surfactant.     

Substituent effects on heats of formation, group interactions, and detonation properties of polyazidocubanes

We have calculated the heats of formation (HOFs) for a series of polyazidocubanes by using the density functional theory (DFT), Hartree-Fock, and MP2 methods with 6-31G* basis set as well as semiempirical methods. The cubane skeleton was chosen for a reference compound, that is, the cubane skeleton was not broken in the process of designing isodesmic reactions. There exists group additivity for the HOF with respect to the azido group. The semiempirical AM1 method also produced reliable results for the HOFs of the title compounds, but the semiempirical MINDO3 did not. The relationship between HOFs and molecular structures was discussed. It was found that the HOF increases 330-360 kJ/mol for each additional number of the azido group being added to the cubane skeleton. The distance between azido groups slightly influences the values of HOFs. The interacting energies of neighbor azido groups in polyazidocubanes are in the range of 2.3 approximately 6.6 kJ/mol, which are so small and less related to the substituent numbers. The average interaction energy between nearest neighbor --N3 groups in the most stable conformer of octaazidocubane is 2.29 kJ/mol at the B3LYP/6-31G* level. The relative stability related to the number of azido groups of the title compounds was assessed based on the calculated HOFs, the energy gaps between the frontier orbitals, and the bond orders of the C--N3 and C--C bonds. The predicted detonation velocity of hepta- and octa-derivatives is over 9 km/s, and the detonation pressure of them is ca. 40 GPa or over.     

Position-space renormalization for systems with weak long-range interactions and the breakdown of hyperscaling

Exact renormalization group equations are derived for a position-space renormalization of spin systems with weak long-range forces. It is shown how an apparent dependence of the critical exponents on the choice of the renormalization group can be resolved via the mechanism of dangerous irrelevant variables and that this same mechanism is responsible for the breakdown of hyperscaling. The dimensiond=4 can be seen to be a borderline dimension above which classical critical exponents are expected.