Quantum chemical study of IrFn (n = 1–7) clusters: An investigation of superhalogen properties

In present investigation, the interactions of iridium (Ir) atom with fluorine (F) atoms have been studied using the density functional theory. Up to seven F atoms were able to bind to a single Ir atom which resulted in increase of electron affinities successively, reaching a peak value of 7.85 eV for IrF₇. The stability and reactivity of these clusters were analyzed by calculating highest occupied molecular orbital (HOMO)–LUMO gaps, molecular orbitals and binding energies of these clusters. The unusual properties of these clusters are due to the involvement of inner shell 5d‐electrons, which not only allows IrF_n clusters to belong to the class of superhalogens but also shows that its valence can exceed the nominal value of 2. © 2012 Wiley Periodicals, Inc.     

A computational investigation on the geometries,stabilities, antioxidant activity,and the substituent effects of the L‐ascorbic acid and their derivatives

The geometries, stabilities, and antioxidant activities of L‐Ascorbic acid (1a), D‐erythroascorbate (2a), and D‐erythroascorbate glucoside (3a) as well as their sulfur and selenium derivatives are systematically investigated by using density functional theory. Emphasis is placed on studies of the two main mechanisms, that is, hydrogen atom donation and single‐electron transfer, and the O—H bond dissociation enthalpy and the ionization potential are computed in the gas phase and water solution. The calculated results indicate that the 2‐OH group in the five‐membered ring acts as an important H atom donor to free radicals. The 2‐OH radical spin density distribution shows that the unpaired electron is mostly located at the C3 atom of the five‐membered ring and partially at the vicinal O atoms, proving that a certain delocalization of the odd electron is effective in the five‐membered ring. In water aqueous solution, the antioxidant capacity and the electron donating ability are increased as the O atom in the five‐membered ring of 1a, 2a, and 3a is replaced by S and Se, respectively, in good agreement with experimental measurements; Furthermore, their antioxidant capacities are enhanced as compared with the standard antioxidant (resveratrol). © 2013 Wiley Periodicals, Inc.     

ClF-分子离子的结构与势能函数

采用单、双取代包括三重激发的二次组态相互作用[QCISD(T)]方法和单、双取代包括非迭代三重激发的耦合簇理论[CCSD(T)]方法, 结合相关一致基组aug-cc-pVXZ (X=D, T, Q, 5)对基态³⁵ClF^-和³⁷ClF^- (X²Σ⁺)分子离子进行了结构优化计算. 对CCSD(T)方法的计算结果用四种方法分别外推至基组极限, 得到了体系在基组极限的平衡结构常数. 在CCSD(T)/aug-cc-pVXZ (X=D, T, Q, 5)理论水平进行了单点能扫描. 对扫描计算结果进行基组外推并用Murrell-Sorbie 势能函数拟合得到了体系的解析势能函数表达式, 并进一步得到了³⁵ClF^-和³⁷ClF^-的光谱常数. 拟合所得势能曲线准确地再现了其离解能和平衡结构特征. 对ClF 中性自由基采用完全相同的理论方法进行了计算. 所得结果与有关文献中的实验结果符合得很好, 而且在一定程度上证明了将该理论方法应用于ClF^-分子离子的计算是合适而可靠的. ClF 自由基的优化计算结果还被用于计算其电子亲和能.ClF^-的垂直解离能也同时计算得出. 基于ClF^-的结构优化和单点能扫描计算结果, 通过求解核运动的径向薛定谔方程, 得到了无转动³⁵ClF^-和³⁷ClF^-(X²Σ⁺)的全部振动态及相应的分子常数.     

十二烷基硫酸钠水溶液的动态表面吸附性质

利用MPTC型气泡压力张仪研究了十二烷基硫酸钠(SDS)溶液在不同NaCl 浓度下的动态表面吸附性质, 分析了离子型表面活性剂在表面吸附层和胶束中形成双电层结构产生表面电荷对动态表面扩散过程和胶束性质的影响. 结果表明, SDS在表面吸附过程中, 表面电荷的存在会产生5.5 kJ·mol^-1的吸附势垒(E_a), 显著降低十二烷基硫酸根离子(DS^-)的有效扩散系数(D_eff). 十二烷基硫酸根离子的有效扩散系数与自扩散系数(D)的比值(D_eff/D)仅为0.013, 这表明SDS与非离子型表面活性剂不同, 在吸附初期为混合动力控制吸附机制. 加入NaCl可以降低吸附势垒. 当加入不小于80 mmol·L^-1 NaCl后, E_a小于0.3 kJ·mol^-1, D_eff/D在0.8-1.2之间, 表现出与非离子型表面活性剂相同的扩散控制吸附机制. 同时, 通过分析SDS胶束溶液的动态表面张力获得了表征胶束解体速度的常数(k₂). 发现随着NaCl 浓度的增大, k₂减小, 表明SDS胶束表面电荷的存在会增加十二烷基硫酸根离子间的排斥力, 促进胶束解体.     

二氧化碳在铜表面的吸附研究及其光致分解

使用X光电子能谱(XPS)及高分辨电子能量损失谱(HREELS)研究了二氧化碳在铜表面的吸附及其光化学反应.通过实验条件控制将物理吸附及化学吸附的二氧化碳吸附物种分别分离在规整铜表面及无序铜表面上,并使用193 nm激光对其照射研究其相应的光化学反应.结果表明只有化学吸附的二氧化碳物种在光诱导下发生了解理反应,而物理吸附的二氧化碳未发生反应.     

Self-optimizing Diffusion Quantum Monte Carlo Calculation: the Potential Energy Curve of C_2

11NTRODUCTIONDiffusionquantumMonteCarlo(DMC)isoneofthesimplestofthevariousMonteCarlotechniquesavailabletosolvetheSchrodingerequation,forarecentre-viewofDMC(seeRef[1i).Foravarietyofsmallatomsandmolecules,DMChasbeenshowntobecapableofprovidinganestimateoftheground-state(nonrelativistic)energywithanaccuracycomparabletogoodqualityClcalculations,evenwhenarelativelysimpletrialwavefunctionisemployed.However,todate,thereareseveralobstaclesinaDMCcalculation:(1)BeforetheDMCcomputation,thepar…     

木质素模化物键离解能的理论研究

采用密度泛函理论B3P86方法,在6-31G(d,p)基组水平上,对木质素结构中的6种连接方式(β-O-4、α-O-4、4-O-5、β-1、α-1、5-5)的63个木质素模化物的醚键(C-O)和C-C键的键离解能E_B进行了理论计算研究。分析了不同取代基对键离解能的影响以及键长与键离解能的相关性。计算结果表明,C-O键的键离解能通常比C-C键的小,在各种醚键中C_α-O键的平均键离解能最小,为182.7 kJ/mol;其次是β-O-4连接中的C_β-O键,苯环和烷烃基上的取代基对醚键的键离解能有较强的弱化作用,C-O键的键长和键离解能的相关性较差。与C-O键相比,C-C键的键离解能受苯环上取代基的影响很小,而烷烃基上的取代基对C-C键的键离解能有较大的影响,C-C键的键离解能和键长之间存在较强的线性关系,C-C键的键长越长,其键离解能越小。     

与蛋白质调控DNA空穴迁移相关的具有负离解能特征的亚稳态氢键

利用密度泛函理论方法研究了作为空穴迁移载体的蛋白质复合的DNA三聚体(Protonated arginine…guanine…cytosine, ArgH⁺-GC)的氢键性质. 结果表明, 空穴迁移通过该载体单元时此类氢键表现为亚稳态, 且具有明显的负离解能. 正常情况下ArgH⁺基团在大小沟均能与GC碱对形成氢键, 且具有正的离解能. 然而, 当空穴转移至此将削弱氢键至亚稳态, 使之具有一定的离解势垒和负的离解能. 这种势垒抑制的负离解能现象意味着由于空穴俘获导致此三聚体结构单元在它的ArgH⁺…N7/O6键区储存了一定的能量(约108.78 kJ/mol). 该氢键离解通道受控于此键区两个相关组分之间的静电排斥和氢键吸引之间的平衡以及这两个相反作用随氢键距离不同的衰减速率. 基于电子密度分布的拓扑性质以及键临界点的Laplacian数值分析澄清了此类特殊的能量现象主要源自通过高能氢键(ArgH⁺…N7/O6)连接的授受体间的静电排斥. 进一步空穴俘获诱导的G→C质子转移可扩展负离解能区至ArgH⁺…N7/O6和Watson-Crick(WC) 氢键区. 另外, ArgH⁺ 结合到GC的大小沟增加其电离势, 因此削弱其空穴传导能力, 削弱程度取决于ArgH⁺与GC的距离. 推而广之, 在protonated lysine-GC和protonated histidine-GC体系也可观察到类似的现象. 显然, 此类性质可调的亚稳态氢键可调控DNA空穴迁移机理. 此工作为理解蛋白质调控的DNA空穴迁移机理提供了重要的能量学信息.     

Competition STD NMR for the detection of high-affinity ligands and NMR-based screening

The reported competition STD NMR method combines saturation transfer difference (STD) NMR with competition binding experiments to allow the detection of high-affinity ligands that undergo slow chemical exchange on the NMR time-scale. With this technique, the presence of a competing high-affinity ligand in the compound mixture can be detected by the disappearance or reduction of the STD signals of a low-affinity indicator ligand. This is demonstrated on a BACE1 (beta-site amyloid precursor protein cleaving enzyme 1) protein-inhibitor system. This method can also be used to derive an approximate value, or a lower limit, for the dissociation constant of the potential ligand based on the reduction of the signal intensity of the STD indicator, which is illustrated on an HSA (human serum albumin) model system. This leads to important applications of the competition STD NMR method for lead discovery: it can be used (i) for compound library screening against a broad range of drug targets to identify both high- and low-affinity ligands and (ii) to rank order analogs rapidly and derive structure-activity relationships, which are used to optimize these NMR hits into viable drug leads.     

Polarization Dependence of a Hydrophobized Electrode for Electrosynthesis of a Soluble Product

An equation for a polarization curve of a hydrophobized electrode is proposed for electrosynthesis of a soluble electroactive product in an inner-kinetic mode. The equation contains the concentration of the target product (TP) in an explicit form. The shape of the curve depends on the biquadratic root of the TP concentration and the square root of the ratio between exchange currents of the side and target reactions.