CompassR Yields Highly Organic-Solvent-Tolerant Enzymes through Recombination of Compatible Substitutions

The CompassR (computer-assisted recombination) rule enables, among beneficial substitutions, the identification of those that can be recombined in directed evolution. Herein, a recombination strategy is systematically investigated to minimize experimental efforts and maximize possible improvements. In total, 15 beneficial substitutions from Bacillus subtilis lipase A (BSLA), which improves resistance to the organic cosolvent 1,4-dioxane (DOX), were studied to compare two recombination strategies, the two-gene recombination process (2GenReP) and the in silico guided recombination process (InSiReP), employing CompassR. Remarkably, both strategies yielded a highly DOX-resistant variant, M4 (I12R/Y49R/E65H/N98R/K122E/L124K), with up to 14.6-fold improvement after screening of about 270 clones. M4 has a remarkably enhanced resistance in 60 % (v/v) acetone (6.0-fold), 30 % (v/v) ethanol (2.1-fold), and 60 % (v/v) methanol (2.4-fold) compared with wild-type BSLA. Molecular dynamics simulations revealed that attracting water molecules by charged surface substitutions is the main driver for increasing the DOX resistance of BSLA M4. Both strategies and obtained molecular knowledge can likely be used to improve the properties of other enzymes with a similar α/β-hydrolase fold.     

Photo-initiated base-formation in a polymer matrix

It was found that amines were formed efficiently by the photolysis of O-acyloximes followed by hydrolysis in polystyrene films and the relationship between structures of O-acyloximes and yields of amines were investigated. O-phenylacetyl acetophenone oxime (PaApO), O-pivaloyl acetophenone oxime (PApO), and O-benzoyl acetophenone oxime (BApO) as monofunctional O-acyloximes and O,O′-succinyl diacetophenone oxime (SDApO) and O,O′-glutaryl diacetophenone oxime (GDApO) as bifunctional O-acyloximes were examined. The yields of amines for PaApO and SDApO under N₂ were ca. 70%, which was the highest among O-acyloximes examined in this experiment. On the other hand, the yields for PApO, BApO, and GDApO were less than 15% and it was verified that the hydrogen abstraction by imino radicals via 6-membered cyclic intermediates resulted in the lowering of yields. Although the effect of oxygen under photolysis on the yields of amine for PaApO was negligible under 50% conversion of PaApO, the yield decreased with further increase in the conversion and was 50% at 90% conversion. © 1994 John Wiley & Sons, Inc.     

Recombination and transfer annealing of neutron irradiated and 60Co(II)-doped Ba/CoEDTA/2

Abstract

Kinetics of post recoil isothermal annealing of crystalline Ba/CoEDTA/₂ irradiated in a nuclear reactor or doped by ⁶⁰Co(II) reveals a combination of a monotonous and an oscillatory part amounting 1-3% of the total. The permanent recombination has been found to consist of two first order processes leading to the octahedral structure of the six-co-ordinated ⁶⁰Co(III).     

The effect of configuration complex on dielectronic recombination process in highly ionized plasmas

This paper analyses the effect of configuration complex on dielectronic recombination （DR） process in highly ionized plasmas （Xe^26＋, Dy^38＋, W^46＋） by using the multiconfiguration relativistic Hartree-Fock method. Resonant and nonresonant radiative stabilizing transitions and decays to autoionizing levels followed by radiative cascades are included. Collisional transitions following electron capture are neglected. The remarkable difference between the isoelectronic trend of the rate coefficients for DR through 3d^94l4l′ and through 3d^94l5l′ is emphasized. The trend of DR through 3d^94l4l′ shows irregularities at relatively low temperature due to the progressive closing of DR channels as atomic number Z increases.     

Heterogeneous Chemiluminescence of Crystal Phosphors on X‐Ray or UV Irradiation

Using a highvacuum assembly with molecular beams and setups with an implemented atom probe, we investigated atomic and molecular adsorption luminescence of the oxides CaOBi and MgO in O and O₂ beams and also radicalrecombination luminescence excited by H and O atoms in ZnS and in ZnS,CdS samples activated with silver, copper, and the rareearth element Tm. It is established that exposure to UV light and xray radiation of the CaOBi, MgO, and ZnSTm samples, where the mechanism of direct excitation of heterogeneous chemiluminescence (HCL) is realized, does not influence the characteristics of the heterogeneous chemiluminescence, whereas similar exposure of the ZnS,CdSCu,Al and ZnS,CdSAg samples and of selfactivated ZnS, in which the excitation of heterogeneous chemiluminescence is due to the ionization of the lattice, leads to an increase in the intensity of heterogeneous chemiluminescence up to five orders of magnitude. The mechanisms of the phenomenon are considered.     

Structure and Photoelectric Characteristics of Functional Polymers and of Compositions Based on Them

The electronic processes in disordered organic solids were analyzed, classified, and summarized. They include the photogeneration of charge pairs, electron transport, geminal and bimolecular recombination, and the capture of charge carriers in local electronic states. General criteria were formulated for the targeted search for and the creation of new prospective polymers and their compositions with organic pigments and related compounds having specific photoelectric characteristics for electrographic and holographic media, photoelectric converters, and electroluminescent and photorefractive devices.     

Stereoselective formation of ansa-metallocenes in reactions of radical-anionic salts of acenaphthylene with lanthanide and calcium halides

ansa-Metallocenes (⁵:⁵-C₂₄H₁₆)M(THF)₂ (M = Sm (1), Yb (2), Ca (3)) and (⁵:⁵-C₂₄H₁₆)MI(THF) (M = Dy (8), Er (9), Tm (10), Lu (11)) were prepared in 50—90% yields by the in situ reactions of two equivalents of potassium acenaphthylenide K⁺C₁₂H₈ ^– with MI₂ or MI₃, respectively. Complexes 2 and 3 were also obtained by direct reduction of acenaphthylene with ytterbium and calcium naphthalenides, respectively. An ESR signal of the acenaphthylene radical anion, which was observed upon dissolution of compound 2 in THF, indicates that the [C₂₄H₁₆]^2– ansa-ligand dissociated into two [C₁₂H₈]^·– radical anions. Hydrolysis of complex 2 in benzene afforded 1,1",3,3"-tetrahydro-3,3"-biacenaphthylene (4) and 3,3",4,4"-tetrahydro-3,3"-biacenaphthylene (5). The reaction of complex 2 with ZrCl₄ and the reaction of compound 3 with Me₃SiCl proceeded with the cleavage of the C—C bond between two acenaphthylene fragments of the [C₂₄H₁₆]^2– ansa-ligand to produce (²-C₁₂H₈)ZrCl₂(THF)₃ (6) and bis(trimethylsilyl)acenaphthene (Me₃Si)₂C₁₂H₈ (7), respectively. Compounds 1—3, 6, 7, and 11 were characterized by ¹H and ¹³C NMR spectroscopy. The temperature dependence of the ¹H NMR spectrum of compound 11 in tetrahydrofuran is indicative of the dynamic exchange of the solvent molecules in the coordination sphere of the Lu atom. After cooling of the solution to 210 K, the dynamic process was terminated as evidenced by the nonequivalence of the ¹H signals of two acenaphthylene fragments. According to the X-ray diffraction data for complex 11, dimerization of two acenaphthylene radical anions at the Lu atom gave rise to the rac-ansa-metallocene structure. In compound 11, the Lu atom is ⁵-coordinated by two five-membered rings of the acenaphthylene ligands and also by the I atom and the THF molecule. The coordination environment about the Lu atom is a distorted tetrahedron. The average distance between the lutetium atom and the carbon atoms of the five-membered rings is 2.623 .     

Modeling of recombination kinetics of radical pairs in magnetic field. Comparison with experimental dependences on the frequency of encounters in biradicals

The recombination kinetics of spin-correlated radical pairs (RPs) with three nonequivalent magnetic nuclei were calculated under conditions of enforced encounters between radicals at time-independent frequency n_dif. The simplest two-position model of a RP was used, which includes two states (contact state and distance-separated state) of the RP, differing in magnitude of isotropic spin-spin exchange interaction between radicals. The calculated kinetic curves were treated in terms of a three-exponential model. The dependences of corresponding rate constants (k _rec) on n_dif, external magnetic field strength (B ₀), and intensity, A _eff, of isotropic hyperfine coupling (HFC) were obtained. The k _rec-vs.-n_dif or k _rec-vs.-viscosity (n_dif varies simultaneously with the inverse lifetime of the contact state) plots pass through maxima whose positions are shifted from the n_dif region near the A _eff value at B ₀ = 0.5 G toward high n_dif values with an increase in B ₀. At n_dif ≫ A _eff, the k _rec-vs.-B ₀ plots pass through maxima in the region B ₀ = A _eff. The calculated dependences are compared with experimental data on recombination of biradicals. The results of calculations show that the experimentally observed maxima on the k _rec-vs.-B ₀ or k _rec-vs.-n_dif plots can be due to peculiar features of the spin dynamics induced by the hyperfine coupling rather than the exchange interaction effects, as is commonly accepted. __________ Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1103–1110, May, 2005.     

A two‐step reaction scheme leading to singlet carbene species that can be detected under matrix conditions for the reaction of Zr(3F) with either CH3F or CH3CN

The results obtained from CASSCF‐MRMP2 calculations are used to rationalize the singlet complexes detected under matrix‐isolation conditions for the reactions of laser‐ablated Zr(³F) atoms with the CH₃F and CH₃CN molecules, without invoking intersystem crossings between electronic states with different multiplicities. The reaction Zr(³F) + CH₃F evolves to the radical products ZrF· + ·CH₃. This radical asymptote is degenerate to that emerging from the singlet channel of the reactants Zr(¹D) + CH₃F because they both exhibit the same electronic configuration in the metal fragment. Hence, the caged radicals obtained under cryogenic‐matrix conditions can recombine through triplet and singlet paths. The recombination of the radical species along the low‐multiplicity channel produces the inserted structures H₃C? Zr? F and H₂C?ZrHF experimentally detected. For the Zr(³F) + CH₃CN reaction, a similar two‐step reaction scheme involving the radical fragments ZrNC· + ·CH₃ explains the presence of the singlet complexes H₃C? Zr? NC and H₂C?Zr(H)NC revealed in the IR‐matrix spectra upon UV irradiation. © 2014 Wiley Periodicals, Inc.     

激光诱导空气等离子体光谱时间演化特性的研究

利用能量为150mJ和500mJ的激光击穿空气获得空气等离子体,依据光谱信息,计算得到等离子体电子温度,密度,并探讨了其时间演化特性,证实了在此过程中,复合相比电离居于主导地位.同时,结果表明:随着延迟时间的增加,谱线强度在300ns内迅速减小,之后缓慢减小;电子密度和谱线强度的变化规律基本一致;电子温度的衰减近似呈现指数拟合线型,并且激光能量越高,电子温度的衰减越慢.