Ligand-protein docking using a quantum stochastic tunneling optimization method

A novel hybrid optimization method called quantum stochastic tunneling has been recently introduced. Here, we report its implementation within a new docking program called EasyDock and a validation with the CCDC/Astex data set of ligand-protein complexes using the PLP score to represent the ligand-protein potential energy surface and ScreenScore to score the ligand-protein binding energies. When taking the top energy-ranked ligand binding mode pose, we were able to predict the correct crystallographic ligand binding mode in up to 75% of the cases. By using this novel optimization method run times for typical docking simulations are significantly shortened.     

Molekulares S=GeCl2 Matrix-IR-Untersuchungen und ab initio SCF-Rechnungen

The Molecule S?GeCl₂. Matrix IR Investigation and Ab initio SCF Calculation Molecular S?GeCl₂ is found in a matrix reaction between the high-temperature molecule Ge?S and Cl₂. A structure analog to that of phosgene can be derived from the isotopical shifts (⁷⁰Ge/⁷²Ge/⁷³Ge/⁷⁴Ge/⁷⁶Ge and ³⁵Cl/³⁷Cl) within the IR spectra. The normal coordinate analysis results for the Ge?S force constant a value of 4.21 mdyn/Å. The spectroscopic results are confirmed by ab initio SCF calculations.     

Optimisation of the connection between TA-MS systems together with improved data interpretation for TA-MS applications

TA-MS provides chemical and thermal response information. In order for this information to be meaningful sampling must be performed with minimum dead volume and without cold spots. Dead volume leads to response lag and peak broadening. Cold spots result in sample condensation, leading to inaccurate data and potentially inlet blockage. This paper describes a hot zone inlet system and 'in-situ' probe both of which provide fast response, zero dead volume sampling directly to the MS. The paper also discusses data interpretation methodologies and introduces 'soft ionisation' as a means of providing simplified analysis of complex mixtures. This revised version was published online in July 2006 with corrections to the Cover Date.     

Information content of data and variables and types of weighting in least-squares regression methods

Algorithms are given for evaluating the relative amount of useful information related to a particular parameter which is carried by individual data points and intervals of the variables. The algorithms provide an efficient means of using the information contained in a set of data. Applications to the optimization of weighting in regression methods are described. Several informational and combined informational-statistical types of weighting are studied as a means of improving the accuracy and precision of the parameters obtained by non-linear regression.     

Sampling Consensus of 2nd-Order Multi-Agent Systems Based on Time-Varying Topology北大核心CSCD

基于速度一致位移差保持不变的一致性概念,研究了二阶多智能体系统在时变拓扑下的采样一致性问题。首先,引入虚拟领导者,将具有时变拓扑结构的多智能体系统的采样一致性问题转换为误差系统的采样控制稳定性问题。其次,通过预估采样误差,研究采样误差对系统达到一致性的影响。最后,应用Lyapunov稳定性理论,分析所构造的误差系统的稳定性,并给出该误差系统最终稳定的充分条件。数值仿真结果验证了理论分析的有效性和正确性。     

带有随机初值的复值Ginzburg-Landau方程的弱平均动力学*

本文研究了无界域上的带有随机初值的复值Ginzburg-Landau方程.首先, 基于解过程的全局适定性, 建立了带有随机初值的Ginzburg-Landau方程的平均随机动力系统.然后, 证明了弱拉回平均随机吸引子的存在唯一性以及随机吸引子的周期性,并将其进一步推广到加权空间L²(?, L²_σ(R)).     

出租车司机社会贡献评价方法研究

出租车司机的社会贡献对于促进城市经济发展和社会进步具有重要的作用,评价出租车司机的社会贡献是激励出租车司机多做社会贡献的重要手段。为了评价出租车司机的社会贡献,本文提出了一种基于实际出租车运营数据的评价方法。本文设计了运营特性、重点区域、恶劣天气、大事件四个体现司机社会贡献的指标,以此构建了出租车司机社会贡献评价指标体系,进而选用了主观赋权法G1法和客观赋权法拉开档次法相结合的赋权方式对指标赋权,并选择四种评价信息集结方法建立了出租车司机社会贡献评价模型。最后,通过实际的出租车运营数据验证了本方法的可行性。本文为评价出租车司机社会贡献提供了一种研究思路和方法,并对政府政策的制定和企业策略的实施具有一定的启示。     

考虑偏差值的中立型区间交叉效率研究

在不确定性环境下,当决策单元(DMU)的投入产出数据为区间数形式时,为解决决策单元之间既不是合作也不是竞争关系时的交叉评价问题,本文提出一种中立型区间交叉效率模型。从所有被评价者的角度出发解决评价权重的选取问题,以决策单元投入得分的平均偏差与产出得分的平均偏差之和最小化为目标,建立决策单元在最佳和最差两种生产状态下的中立型区间交叉效率模型。在本文提出的中立型模型视角下,DMU的投入得分平均偏差和产出得分平均偏差之和达到最小。算例结果表明该中立型区间交叉效率模型的有效性,解决了不确定性环境下的交叉评价问题,保证评价的客观公正,更加符合现实。     

Low Mach number limit of inviscid Hookean elastodynamics

The low Mach number limit of inviscid Hookean elastodynamic equations is rigorously proved in bounded domain, whole space and periodic domain, respectively. The uniform existence of smooth solutions and convergence results as the Mach number tends to zero are obtained in three different domains.     

Chapter 15 DEA/AR analysis of the 1988–1989 performance of the Nanjing textiles corporation

This article employs new data envelopment analysis/assurance region (DEA/AR) methods to evaluate the efficiency of the 35 textile factories of the Nanjing Textiles Corporation (NTC), Nanjing, China. The returns to scale (RTS) of these factories were studied without assuming that the optimal DEA solutions were unique. All DMUs are identified with pointsE (Extreme Efficient),E (Efficient but not an extreme point) andF (Frontier but not efficient). We then further identify the nonfrontier DMUs with pointsNE, NE andNF according to whether they are projected onto a point inE, E, orF en route to evaluating their performances. All of the inefficient factories were in classNF and had unique optimal primal-dual solution pairs. Consequently, the solution pairs satisfy the strong complementary slackness condition (SCSC). Application of cone-ratio (CR) ARs reduced significantly the number of factories in classE, and showed that some AR-efficient factories were more flexible in adopting the mixture of central planning and market economies that China currently is trying to use. Also, linked-cone (LC) ARs were applied to measure maximum and minimum profit ratios. The SCSC multiplier space approach was utilized to analyze the sensitivity of the efficiency results to potential errors in the data with and without ARs. The results in this article suggest that collective units had a better performance than state-owned units in the two consecutive years analyzed.This paper was written while the author was at the School of Economics and Management, Southeast University, Nanjing 210018, P.R. China.