Toward amino acid typing for proteins in FFLUX

Continuing the development of the FFLUX, a multipolar polarizable force field driven by machine learning, we present a modern approach to atom‐typing and building transferable models for predicting atomic properties in proteins. Amino acid atomic charges in a peptide chain respond to the substitution of a neighboring residue and this response can be categorized in a manner similar to atom‐typing. Using a machine learning method called kriging, we are able to build predictive models for an atom that is defined, not only by its local environment, but also by its neighboring residues, for a minimal additional computational cost. We found that prediction errors were up to 11 times lower when using a model specific to the correct group of neighboring residues, with a mean prediction of ∼0.0015 au. This finding suggests that atoms in a force field should be defined by more than just their immediate atomic neighbors. When comparing an atom in a single alanine to an analogous atom in a deca‐alanine helix, the mean difference in charge is 0.026 au. Meanwhile, the same difference between a trialanine and a deca‐alanine helix is only 0.012 au. When compared to deca‐alanine models, the transferable models are up to 20 times faster to train, and require significantly less ab initio calculation, providing a practical route to modeling large biological systems. © 2016 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc.     

Partial atomic multipoles for internally consistent microelectrostatic calculations

An extension of the extant microelectrostatic methodologies, based on the concept of distributed generalized polarizability matrix derived from the Coupled Perturbed Hartree–Fock (CPHF) equations, is proposed for self‐consistent calculation of charge carrier and charge‐transfer (CT) state electrostatic energies in molecular solids, including the doped, defected and disordered ones. The CPHF equations are solved only once and the generalized molecular polarizability they yield enables low cost iterations that mutually adjust the molecular electronic distributions and the local electric field in which the molecules are immersed. The approach offers a precise picture of molecular charge densities, accounting for atomic partial multipoles up to order 2, which allows one to reproduce the recently reported large charge‐quadrupole contributions to CT state energies in low‐symmetry local environments. It is particularly well suited for repetitive calculations for large clusters (up to 300,000 atoms), and may potentially be useful for describing electrostatic solvent effects. © 2017 Wiley Periodicals, Inc.     

[Cu6(NGuaS)6]2+ and its oxidized and reduced derivatives: Confining electrons on a torus

The hexanuclear thioguanidine mixed‐valent copper complex cation [Cu₆(NGuaS)₆]⁺² (NGuaS = o‐SC₆H₄NC(NMe₂)₂) and its oxidized/reduced states are theoretically analyzed by means of density functional theory (DFT) (TPSSh + D3BJ/def2‐TZV (p)). A detailed bonding analysis using overlap populations is performed. We find that a delocalized Cu‐based ring orbital serves as an acceptor for donated S p electrons. The formed fully delocalized orbitals give rise to a confined electron cloud within the Cu₆S₆ cage which becomes larger on reduction. The resulting strong electrostatic repulsion might prevent the fully reduced state. Experimental UV/Vis spectra are explained using time‐dependent density functional theory (TD‐DFT) and analyzed with a natural transition orbital analysis. The spectra are dominated by MLCTs within the Cu₆S₆ core over a wide range but LMCTs are also found. The experimental redshift of the reduced low energy absorption band can be explained by the clustering of the frontier orbitals. © 2017 Wiley Periodicals, Inc.     

新型反相/强阴离子交换混合模式材料用于磷酸化肽富集

建立了新型反相/强阴离子交换混合模式材料(C18/SAX)的磷酸化肽富集方法.考察了流动相组成(乙腈浓度、甲酸浓度、缓冲盐浓度)对酪蛋白(α-Casein)酶解液中磷酸化肽分离选择性的影响.实验结果表明,磷酸化肽在C18/SAX上的保留行为受疏水和离子交换作用力的共同调控,单磷酸化肽先于多磷酸化肽从材料上洗脱出来.随着甲酸浓度增加,磷酸化肽的保留减弱;随着盐浓度增加,磷酸化肽保留变小.采用优化后的流动相,建立以20％ ACN/20 mmol/L NH4Ac作为上样溶液,20％ ACN/0.1％ FA和50％ ACN/100 mmol/L NH4Ac/2％ FA分别作为洗脱液分段洗脱单、多磷酸化肽的方法.以α-Casein和人血清白蛋白(HSA)酶解液的混合溶液(1∶20,n/n)作为模拟样品,实现了单、多磷酸化肽的同时富集和分段洗脱,分别检测到4条单磷酸化肽和14条多磷酸化肽的信号.将本方法用于牛奶中的磷酸化肽检测,共鉴定到4条单磷酸化肽和8条多磷酸化肽信号.结果表明,本富集方法选择性高,有良好的应用前景.     

离子交换法制备廉价而高效的可见光驱动CaMg(CO3)2@Ag2CO3微球光催化剂

Ag2CO3是一种典型的银基半导体,可在可见光照射下降解各种有机染料,但制备成本高,光腐蚀严重,稳定性差,难以循环利用等,因而限制了它的实际应用.针对这些问题,目前多数的改进措施是构建异质结,有效的分离光生电子与空穴来提高Ag2CO3的光催化性能.比如典型的异质结光催化剂有TiO2/Ag2CO3,Ag2CO3/ZnO,Ag2O/Ag2CO3和AgX/Ag2CO3等.也有在表面化学沉积,光化学还原Ag等贵金属形成等离子体等方式提高其光催化性能,但是很少通过特殊形貌控制以提高Ag2CO3的光催化性能.最近的研究表明,由于多尺度微球结构催化剂具有高效的光捕能力,同时具有比表面积大、易沉降,良好的物质传输能力和表面的渗透性,因而在液相光催化反应中具有明显的优势.因此,我们期望制备出一个多尺度微球结构Ag2CO3光催化剂.CaMg(CO3)2是一种具有微球结构的半导体,它与Ag2CO3有相同的阴离子结构,但是两者在水溶液中的溶解度相差较大,利用这个特性理论上可以将两个不同的半导体结合在一起,得到一种新型的复合微球.本文以CaMg(CO3)2微球为硬模板,通过简单的离子交换成功制备了粒径约为10μm的CaMg(CO3)2@Ag2CO3微球.利用X射线衍射、N2物理吸附、扫描电镜、傅里叶变换红外光谱和紫外-可见漫反射吸收光谱、光电流等手段对在不同反应时间与温度下制得的CaMg(CO3)2与Ag2CO3的复合物进行了表征.结果表明,在40°C下Ag+与Ca2+、Mg2+离子交换4 h后,得到了一种多尺度CaMg(CO3)2@Ag2CO3复合微球.此时,微球中Ag2CO3的含量约为2.56%.结果表明,这种具有多尺度结构的复合微球能够增强可见光的吸收.电化学阻抗测试和光电流测试表明,CaMg(CO3)2核的存在可以降低光生载流子的迁移阻力,进而促进光生电子与空穴的分离.在光降解酸性橙II的测试中,核壳结构的CaMg(CO3)2@Ag2CO3复合微球表现出了更高的催化活性,而且具有更好的循环使用性能.同时,相对于纯Ag2CO3光催化剂来说,CaMg(CO3)2@Ag2CO3复合微球制备的成本大幅度降低.ESR测试证明了·OH为CaMg(CO3)2@Ag2CO3复合微球光催化过程中的主要活性物质.     

控制爆破拆除大型球磨机基础

在选矿车间的狭小范围内,用控爆技术拆除大型构筑物的基础是一大难题。本文针对大型设备基础的爆破实践,简述了复杂环境下控爆拆除方案及使用不同爆破参数和装药结构的设计,并对预裂切割爆破的特点及爆破效果进行了评述。     

岩石爆破的粉碎区及其空腔膨胀

本文根据爆炸冲击波的理论分析,讨论了柱形装药和球形装药的粉碎区半径、炮孔近区的压缩比、爆破空腔及其空腔的发展时间。通过分析,给出柱形装药的爆炸近区参数。计算结果表明:2号铵梯岩石炸药柱形装药在岩石介质中产生的粉碎区半径一般是炮孔半径的1.65～3.05倍,球装药在岩石介质中产生的粉碎区半径是球形装药半径的1.28～1.75倍;柱形装药在孔壁处的冲击波波长与炮孔半径属于同一量级;粉碎区内的平均压缩比为1.05～1.10。     

强碱性阴离子交换树脂催化菜籽油酯交换反应合成脂肪酸甲酯

以强碱性阴离子交换树脂作为催化剂,催化菜籽油与甲醇酯交换反应制备脂肪酸甲酯(FAME)。结果表明,产品收率随着醇油比增大而提高,当醇油比(V/V)达到7.21后,收率增加逐渐变慢;在树脂最高使用温度以下,反应温度越高,产品收率越高;产品收率随催化时间增长而提高,但提高速度逐渐趋缓;催化剂活性稳定,利用再生树脂连续催化28.7h,未见活性下降。常压下,醇油比4.54,60℃下反应54.7min,FAME产品收率达96.80%。