Electrochemical polymerization of (2-dodecyl-4, 7-di (thiophen-2-yl)-2H-benzo[d][1,2,3] triazole): a novel matrix for biomolecule immobilization

A recently synthesized conducting polymer [poly(2-dodecyl-4,7-di(thiophen-2-yl)-2H-benzo[d][1,2,3]triazole (PTBT)] was tested as a platform for biomolecule immobilization. After electrochemical polymerization of the monomer (TBT) on graphite electrodes, immobilization of glucose oxidase (GOx,β-D-glucose: oxygen-1-oxidoreductase, EC 1.1.3.4) was carried out. To improve the interactions between the enzyme and hydrophobic alkyl chain on the polymeric structure, GOx and isoleucine (Ile) amino acid were mixed in sodium phosphate buffer (pH 7.0) with a high ionic strength (250 × 10(-3) M). The solution is then casted on the polymer film, and the amino groups in the protein structure were crosslinked using glutaraldehyde (GA) as the bifunctional agent. Finally, the surface was covered with a perm-selective membrane. Consequently, cross-linked enzyme crystal (CLEC) like assembles with regular shapes were observed after immobilization. Microscopic techniques such as scanning electron microscopy (SEM) and fluorescence microscopy were used to monitor the surface morphologies of both the polymer and the bioactive layer. Electrochemical responses of the enzyme electrodes were measured by monitoring O(2) consumption in the presence of glucose at -0.7 V. The optimized biosensor showed a very good linearity between 0.05 and 2.5 × 10(-3) M with a 52 s response time and a detection limit (LOD) of 0.029 × 10(-3) M to glucose. Also, kinetic parameters, operational and storage stabilities were determined. K(m) and I(max) values were found as 4.6 × 10(-3) M and 2.49 μA, respectively. It was also shown that no activity was lost during operational and storage conditions. Finally, proposed system was applied for glucose biomonitoring during fermentation in yeast culture where HPLC was used as the reference method to verify the data obtained by the proposed biosensor.     

Trifluoromethyl‐Substituted Conjugated Oligoelectrolytes

Conjugated oligoelectrolytes (COEs) are being introduced into a variety of optical and electronic technologies, yet the dependence of their properties as a function of molecular structure remains poorly understood. In response, we designed, synthesized, and examined a new tetracationic COE, namely, 1,4‐bis{9′,9′‐bis[6′′‐(N,N,N‐trimethylammonium)hexyl]‐2′‐fluorenyl}‐2,5‐bis(trifluoromethyl)benzene tetrabromide (FPF‐F6), which contains bulky electron‐withdrawing trifluoromethyl groups, and compared its properties with the unsubstituted counterpart 1,4‐bis{9′,9′‐bis[6′′‐(N,N,N‐trimethylammonium)hexyl]‐2′‐fluorenyl}benzene tetrabromide (FPF). The ground‐state geometry of FPF‐F6 is primarily twisted with little electronic communication between the aromatic units, as confirmed by single‐crystal X‐ray diffraction studies of the neutral precursor. However, absorption and photoluminescence spectroscopies reveal that the excited state of FPF‐F6 displays strong intramolecular charge‐transfer characteristics. Solution AFM in aqueous media shows that introduction of trifluoromethyl groups changes the size and aspect ratio of supramolecular aggregates that are brought together as a result of hydrophobic interactions. Furthermore, addition of ssDNA to FPF‐F6 leads to interoligoelectrolyte complexes wherein the backbone is more planar; the environment the chromophore experiences under these conditions is also considerably less polar. These findings provide considerable insight into the complex photophysics of electronically conjugated materials in aqueous media.     

Noncovalent Assembly of Picket‐Fence Porphyrins on Nitrogen‐Doped Carbon Nanotubes for Highly Efficient Catalysis and Biosensing

A water‐insoluble picket‐fence porphyrin was first assembled on nitrogen‐doped multiwalled carbon nanotubes (CN_x MWNTs) through Fe? N coordination for highly efficient catalysis and biosensing. Scanning electron micrographs, Raman spectra, X‐ray photoelectron spectra, UV/Vis absorption spectra, and electrochemical impedance spectra were employed to characterize this novel nanocomposite. By using electrochemical methods on the porphyrin at low potential in neutral aqueous solution, the presence of CN_x MWNTs led to the direct formation of a high‐valent iron(IV)–porphyrin unit, which produced excellent catalytic activity toward the oxidation of sulfite ions. By using sulfite ions, a widely used versatile additive and preservative in the food and beverage industries, as a model, a highly sensitive amperometric biosensor was proposed. The biosensor showed a linear range of four orders of magnitude from 8.0×10^?7 to 4.9×10^?3 mol L^?1 and a detection limit of 3.5×10^?7 mol L^?1 due to the highly efficient catalysis of the nanocomposite. The designed platform and method had good analytical performance and could be successfully applied in the determination of sulfite ions in beverages. The direct noncovalent assembly of porphyrin on CN_x MWNTs provided a facile way to design novel biofunctional materials for biosensing and photovoltaic devices.     

Conformationally restricted aza-BODIPY: highly fluorescent, stable near-infrared absorbing dyes

Novel NIR fluorescent, conformational restricted aza-dipyrromethene boron difluoride (aza-BODIPY) dyes were prepared by an efficient process. Such conformational restricted aza-BODIPY dyes possess intense absorption, strong fluorescence, high chemical and photostability. Additionally, the sharp fluorescence of non-amine containing aza-BODIPY dyes is insensitive to solvent polarity.     

Ab initio protein fold prediction using evolutionary algorithms: influence of design and control parameters on performance

True ab initio prediction of protein 3D structure requires only the protein primary structure, a physicochemical free energy model, and a search method for identifying the free energy global minimum. Various characteristics of evolutionary algorithms (EAs) mean they are in principle well suited to the latter. Studies to date have been less than encouraging, however. This is because of the limited consideration given to EA design and control parameter issues. A comprehensive study of these issues was, therefore, undertaken for ab initio protein fold prediction using a full atomistic protein model. The performance and optimal control parameter settings of twelve EA designs where first established using a 15-residue polyalanine molecule-design aspects varied include the encoding alphabet, crossover operator, and replacement strategy. It can be concluded that real encoding and multipoint crossover are superior, while both generational and steady-state replacement strategies have merits. The scaling between the optimal control parameter settings and polyalanine size was also identified for both generational and steady-state designs based on real encoding and multipoint crossover. Application of the steady-state design to met-enkephalin indicated that these scalings are potentially transferable to real proteins. Comparison of the performance of the steady state design for met-enkephalin with other ab initio methods indicates that EAs can be competitive provided the correct design and control parameter values are used.     

Substrate-independent transduction of chromophore-free organic and biomolecular transformations into color

The concept of synthetic multifunctional pores as substrate-independent optical signal transducers of chemical reactions is introduced with emphasis on the combination with substrate-specific signal generation in biomolecular transformations. Comparison with the general electrochemical transduction, known from conventional biosensors, and the general optical transduction of analyte-specific biomolecular recognition (rather than transformation), known from immunosensing, reveals the fundamental nature of the concept as well as an attractive complementarity to existing methods. Examples with transferases, hydrolases, lyases, and even an isomerase demonstrate that optical transduction with synthetic multifunctional pores is general far beyond the substrate-specific signal generators of electrochemical transduction, that is, the oxidoreductases, and absolutely unproblematic. In part very recent breakthroughs are used to highlight the remarkable promise of synthetic multifunctional pores as optical transducers of biomolecular transformation with regard to practical sensing and screening applications.     

l-Glutamate biosensor for estimation of the taste of tomato specimens

An amperometric biosensor has been developed for measurement of Umami, or the taste based on the amount of L-glutamate, in tomato foods. The biosensor is based on an enzyme-mediator system in which L-glutamate oxidase is used for biochemical oxidation of L-glutamate and a tetrafulvalene-tetracyanoquinodimethane (TTF-TCNQ) paste, prepared from the mixture of TTF-TCNQ salt, graphite powder, and silicone oil, serves as the mediator. The limit of detection, calculated by use of a four-parameter logistic model, was 0.05 mmol L(-1), and the limit of quantification was 0.15 mmol L(-1). The correlation coefficient (R2) was 0.990 and the relative standard deviation was no more than 1% (n=5). The response time (tau (95)) was 20-50 s, depending on concentration. The repeatability of the sensor was better than 5% (n=10). The sensor developed was stable for more than ten days.