Targeting the Substrate Binding Site of E. coli Nitrile Reductase QueF by Modeling,Substrate and Enzyme Engineering

Nitrile reductase QueF catalyzes the reduction of 2‐amino‐5‐cyanopyrrolo[2,3‐d]pyrimidin‐4‐one (preQ₀) to 2‐amino‐5‐aminomethylpyrrolo[2,3‐d]pyrimidin‐4‐one (preQ₁) in the biosynthetic pathway of the hypermodified nucleoside queuosine. It is the only enzyme known to catalyze a reduction of a nitrile to its corresponding primary amine and could therefore expand the toolbox of biocatalytic reactions of nitriles. To evaluate this new oxidoreductase for application in biocatalytic reactions, investigation of its substrate scope is prerequisite. We report here an investigation of the active site binding properties and the substrate scope of nitrile reductase QueF from Escherichia coli. Screenings with simple nitrile structures revealed high substrate specificity. Consequently, binding interactions of the substrate to the active site were identified based on a new homology model of E. coli QueF and modeled complex structures of the natural and non‐natural substrates. Various structural analogues of the natural substrate preQ₀ were synthesized and screened with wild‐type QueF from E. coli and several active site mutants. Two amino acid residues Cys190 and Asp197 were shown to play an essential role in the catalytic mechanism. Three non‐natural substrates were identified and compared to the natural substrate regarding their specific activities by using wild‐type and mutant nitrile reductase.     

Albumin-mediated asymmetric nitroaldol reaction of aromatic aldehydes with nitromethane in water

We succeeded in the asymmetric nitroaldol (Henry) reaction of aromatic aldehydes with nitromethane using human serum albumin (HSA) in water at neutral pH. The reaction of 4-nitrobenzaldehyde smoothly proceeded for 24 h at 30 °C to afford the corresponding (R)-2-nitro-1-(4-nitrophenyl)ethanol (27% ee). Lowering the reaction temperature to 0 °C improved the enantioselectivity (53% ee). Although the denatured HSA also catalyzed the coupling reaction, no enantioselectivity was observed. The reaction was also applicable to other substrates bearing various substitutions on the benzene ring, and the ee of (R)-1-(biphenyl-4-yl)-2-nitroethanol was up to 79% ee.     

Cinnamic acid hydrogen bonds to isoniazid and N′‐(propan‐2‐ylidene)isonicotinohydrazide,an in situ reaction product of isoniazid and acetone

A new polymorph of the cinnamic acid–isoniazid cocrystal has been prepared by slow evaporation, namely cinnamic acid–pyridine‐4‐carbohydrazide (1/1), C₉H₈O₂·C₆H₇N₃O. The crystal structure is characterized by a hydrogen‐bonded tetrameric arrangement of two molecules of isoniazid and two of cinnamic acid. Possible modification of the hydrogen bonding was investigated by changing the hydrazide group of isoniazid via an in situ reaction with acetone and cocrystallization with cinnamic acid. In the structure of cinnamic acid–N′‐(propan‐2‐ylidene)isonicotinohydrazide (1/1), C₉H₈O₂·C₉H₁₁N₃O, carboxylic acid–pyridine O—H...N and hydrazide–hydrazide N—H...O hydrogen bonds are formed.     

2‐Ethylsulfanyl‐7‐(furan‐2‐yl)‐4‐(thiophen‐2‐yl)pyrazolo[1,5‐a][1,3,5]triazine: π‐stacked chains of hydrogen‐bonded R22(10) dimers

In the title compound, C₁₅H₁₂N₄OS₂, the bond distances in the fused heterocyclic system show evidence for aromatic‐type delocalization in the pyrazole ring with some bond fixation in the triazine ring. The thiophenyl substituent is slightly disordered over two sets of atomic sites having occupancies of 0.934 (4) and 0.066 (4). The non‐H atoms in the entire molecule are nearly coplanar, with the planes of the furanyl substituent and the major orientation of the thiophenyl substituent making dihedral angles of 5.72 (17) and 1.8 (3)°, respectively, with that of the fused ring system. Molecules are linked into centrosymmetric R₂²(10) dimers by C—H...O hydrogen bonds and these dimers are further linked into chains by a single π–π stacking interaction. Comparisons are made with some related 4,7‐diaryl‐2‐(ethylsulfanyl)pyrazolo[1,5‐a][1,3,5]triazines which contain variously substituted aryl groups in place of the furanyl and thiophenyl substituents in the title compound.     

结合PBL课例的无机化学线下对分课堂教学设计与实践*

以原电池一节教学设计为例,探索了将PBL课例融入对分课堂教学模式。教学实践表明,新教学模式激发了学生的学习兴趣,提高了学生学习的积极性和主动性,提升了课程教学效果,达到了课程教学目标。对PBL课例与对分课堂有机融合的全新课堂教学模式的建设与发展进行了展望。     

LeDock与PyMOL软件在天然产物化学课程教学中的应用*——以中药防治新冠病毒肺炎(COVID-19)为例

以中药防治新冠病毒肺炎(COVID-19)为例,在天然产物化学课程教学中借助LeDock软件进行天然产物小分子与受体蛋白分子之间的半柔性对接,用PyMOL软件分析天然产物小分子与受体蛋白分子之间的相互作用,全方位充分展示天然产物分子结构和功能之间的关系。教学围绕我国当前形势展开,让学生在了解事实的同时激发其学习热情,培养学生的逻辑思维能力和动手能力,以此来提高教学质量。     

Synthesis of a Novel Chitosan/Basil Oil Blend and Development of Novel Low Density Poly Ethylene/Chitosan/Basil Oil Active Packaging Films Following a Melt-Extrusion Process for Enhancing Chicken Breast Fillets Shelf-Life

An innovative process for the adsorption of the hydrophobic Basil-Oil (BO) into the hydrophilic food byproduct chitosan (CS) and the development of an advanced low-density polyethylene/chitosan/basil-oil (LDPE/CS_BO) active packaging film was investigated in this work. The idea of this study was the use of the BO as both a bioactive agent and a compatibilizer. The CS was modified to a CS_BO hydrophobic blend via a green evaporation/adsorption process. This blend was incorporated directly in the LDPE to produce films with advanced properties. All the obtained composite films exhibited improved packaging properties. The film with 10% CS_BO content exhibited the best packaging properties, i.e., 33.0% higher tensile stress, 31.0% higher water barrier, 54.3% higher oxygen barrier, and 12.3% higher antioxidant activity values compared to the corresponding values of the LDPE films. The lipid oxidation values of chicken breast fillets which were packaged under vacuum using this film were measured after seven and after fourteen days of storage. These values were found to be lower by around 41% and 45%, respectively, compared with the corresponding lipid oxidation values of pure LDPE film.     

提高金属有机骨架材料在二氧化碳热催化转化中的性能:策略及前景展望

近年来,大气中CO2的浓度不断增加,带来全球变暖等一系列严重后果,成为国际社会共同关注的环境问题.将CO2催化转化为高附加值化学品可有效降低其向大气中的排放,同时可实现其资源化利用,符合低碳社会的发展目标.目前,已有多种催化体系实现了CO2向不同化学品的转化.然而,由于CO2自身的热力学稳定性和动力学惰性,这些转化通常需要在苛刻的反应条件和较高能耗下进行.设计开发高效催化体系、实现温和条件下CO2的转化利用引起了工业界和学术界的广泛兴趣.金属有机骨架材料(MOFs)是一类由有机配体和金属中心通过配位键组装而成的有机-无机杂化材料,在很多方面展现出良好的应用性能.由于其结构的多样性、可设计性、高比表面积和多孔性等独特性质,MOFs在催化领域吸引了很多研究者的关注.其中,MOFs作为非均相催化剂在CO2热催化转化中表现出良好的应用前景,已实现多种CO2向高值化学品的转化路径.但这些催化体系也存在一些缺点,如有些MOFs材料在催化反应中稳定性差以及其微孔性对反应中的传质造成限制等.因此,设计稳定的MOFs和MOF-基材料并对其结构进行优化改性,从而在温和条件下实现高效的CO2转化具有重要意义.本文综述了提高MOFs在CO2热催化转化反应中性能的几种策略:(1)对MOFs结构中的配体进行设计,包括具有活性官能团的配体、活性配合物作为配体和引入混合配体设计多元MOF;(2)调节MOFs结构中的金属中心,设计混合金属中心和包含活性金属团簇的金属中心;(3)构筑多级孔MOFs;(4)设计MOF-基的复合材料,包括MOFs作为载体与金属纳米颗粒、活性配合物和聚合物构建复合材料;(5)利用MOFs作为前驱体制备MOF-基衍生物材料,重点阐述了如何增加MOFs作为非均相催化剂的催化活性位点以及在CO2转化反应中各位点之间的协同作用.此外,介绍了原位表征技术在MOF-基材料用于CO2固定和转化中的应用.最后,分析了MOF-基非均相催化材料在CO2热催化转化领域目前面临的问题和挑战,包括MOFs材料结构优化、催化机理研究和规模化制备等方面,并对未来的发展趋势进行了展望.     

通过"双离子键"固载于季鏻盐聚合物的[Rh(CO)I3]2–物种在多相乙醇羰基化中的应用

贵金属物种(Rh或Ir络合物)在均相羰基化和氢甲酰化催化过程得到了广泛的应用,但始终存在分离繁琐等问题,其均相多相化可很大程度上简化分离操作,故一直广受重视.单位点催化剂因其具有可与均相相比拟的较高金属利用率和选择性而成为均相多相化的重要研究方向之一.研究发现,在碘物种存在的情况下用于固载金属物种的配位键容易断裂,进而导致金属物种的流失,而通过离子键固载的[Rh(CO)₂I₂]^–物种更加稳定,比如著名的甲醇羰基化“Acetica^TM”工艺中,[Rh(CO)₂I₂]^–负一价阴离子物种是以离子键的方式固定在带有阳离子骨架的甲基化聚乙烯吡啶树脂上.与甲醇羰基化过程类似的乙醇羰基化过程是生产重要化工中间体丙酸的主要途径之一,但该过程的均相多相化始终存在着稳定性差这一关键问题.为了解决这一问题,基于之前将固载于季鏻盐聚合物的[Rh(CO)I₃]^2–应用于甲醇羰基化的工作,我们将类似的季鏻盐聚合物固载Rh基催化剂Rh-TPISP用于多相乙醇羰基化过程,通过多种表征进一步证明了Rh物种和P物种结构,并提出了“双离子键”模型.P的K边XANES证明了聚合物TPISP的季鏻化阳离子骨架特征.HAADF-STEM测试表明Rh-TPISP中的Rh呈现单位点分散的状态.Rh的XPS和XANES结果证明了Rh-TPISP中Rh物种的价态介于0~+1.通过EXAFS的拟合解析给出了[Rh(CO)I₃]^2–活性中心结构.由于[Rh(CO)₂I₂]^–为经典的羰基化活性中心,为了进一步证明该结构的正确性,我们将Rh-TPISP的EXAFS和IR谱图与标样[PPh3Et]⁺[Rh(CO)₂I₂]^–对比发现:在EXAFS谱图中,Rh-TPISP中的Rh-C峰高低于[PPh3Et]+[Rh(CO)₂I₂]^–的Rh-C峰高,而Rh-TPISP中的Rh-I峰高高于[PPh3Et]+[Rh(CO)₂I₂]^–的Rh-I峰高,这就说明Rh-TPISP中Rh物种的Rh-C配位数小于2,而Rh-I配位数大于2;在IR谱图中,标样[PPh3Et]+[Rh(CO)₂I₂]^–中有两个羰基振动峰,与该物种的两个Rh-C配位键相符,而Rh-TPISP中的只有一个羰基振动峰,说明Rh-C配位数为1.因此,Rh-TPISP催化剂的季鏻盐骨架中的每个P物种带有一个正电荷,每个带有两个负电荷的[Rh(CO)I₃]^2–通过与两个[P]⁺的静电作用进行固载,形成“双离子键”结构.该催化剂在固定床乙醇羰基化过程中表现出优异的羰基化活性、选择性和稳定性.在3.5 MPa、195 oC反应近1000 h后,Rh-TPISP催化剂TOF保持在约350 h–1,丙酰基选择性为95%以上,高出所有文献报道的均相和多相乙醇羰基化活性.其较高的活性主要是因为[Rh(CO)I₃]^2–比传统Rh活性相[Rh(CO)₂I₂]^–具有更强的富电子性,而较高的稳定性主要是由于“双离子键”这种强静电作用比“AceticaTM”工艺中“单离子键”更有利于Rh物种的固载.故Rh-TPISP催化剂中的“双离子键”对其优异的催化性能具有极其重要的作用,对后续多相乙醇羰基化的发展具有重要意义.     

KIT-6负载CeO2催化CO2和甲醇合成碳酸二甲酯

采用不同老化温度(80、100、120和150℃)合成了一系列KIT-6载体,并通过浸渍法制备了相应的CeO_2/KIT-6催化剂。结合X射线衍射、N_2物理吸附、NH_3程序升温脱附、CO_2程序升温脱附、透射电子显微镜、傅里叶变换红外光谱和X射线光电子能谱等表征结果,详细考察了老化温度对KIT-6结构以及CeO_2/KIT-6催化剂直接催化CO_2和甲醇合成碳酸二甲酯(DMC)反应活性的影响。结果表明,不同老化温度下制备的KIT-6均保持其独特的三维孔道结构。随着老化温度升高,KIT-6比表面积先增大后减小,当老化温度为100℃时,KIT-6比表面积达到最大(683 m~2·g~(-1))。KIT-6较高的比表面积有利于提高CeO_2分散度,进而提高暴露的活性位点数量,催化活性随催化剂表面中等碱/酸性吸附位数量和Ce~(3+)含量的增加而逐渐提高。其中,CeO_2/100-KIT-6催化剂中CeO_2颗粒尺寸最小(5.9 nm),暴露的活性位数量最高,催化活性最佳。随后,考察了反应温度和压力对CeO_2/100-KIT-6催化活性的影响。随着反应温度提高,催化活性先升高后降低,当反应温度为140℃时,催化活性最高;且催化活性随反应压力的提高而逐渐增加。在反应温度为140℃、压力为6.8 MPa条件下,催化剂经6次循环后,DMC收率由15 mmol·g_(CeO_2)~(-1)逐渐降低至2.8 mmol·g_(CeO_2)~(-1),原因归结为反应过程中CeO_2纳米颗粒发生团聚,使暴露出的活性位数量减少。