Synthesis,characterization and theoretical evaluations of HMDS promoted chemoselective O-alkylation of uracils

The sodium salts of the conjugated bases of uracils undergo highly chemoselective O⁴-monoalkylation when treated with various alkyl halides in dry DMF, while the use of methyl iodide results in N¹+N³-dimethylation. Theoretical evaluations of the chemo- and regioselectivity along with X-ray crystallographic data are presented.     

Heck cross-coupling of vinyl heteroaromatic compounds with aryl and heteroaryl halides using Pd(II) complex under phosphine-free conditions

The palladium-catalyzed cross-coupling reaction of vinyl heteroaromatic compounds with aryl bromides and heteroaryl bromides is described using air and moisture stable N,N′,N″,O-tetrafunctional Pd catalyst under phosphine-free conditions. As a result a variety of trans-1,2-disubstituted vinyl heterocycles were obtained in high to good yields.     

Splitting multiple bonds: A comparison of methodologies on the accuracy of bond dissociation energies

A benchmarking of different quantum chemical methodologies for the splitting of multiply bonded systems is presented, with an emphasis on quantitative reproduction of experimentally determined dissociation energies. New benchmark full configuration interaction (FCI) calculations are presented for nitrogen and acetylene, and comparisons are made between various methods with both the FCI results and with experiment in an effort to understand qualitatively and quantitatively how well these different methods cope with the bond‐breaking process. It is found that the multireference methods fare well, but are sometimes slowly convergent with respect to the size of the basis set, and in particular the angular momenta of the polarization functions. Single‐reference (SR) wavefunction‐based methods perform poorly against full CI, while CCSD(T) is reasonably accurate for comparison with experiment. Density functional theory with hybrid functionals have very quick basis‐set convergence, and offer reliable estimates of bond dissociation energies. Spin‐restricted SR wavefunctions are found to be poor for such systems, while unrestricted wavefunctions give reasonably good energies, but with severe spin contamination. © 2013 Wiley Periodicals, Inc.     

Understanding the electronic energy transfer pathways in the trimeric and hexameric aggregation state of cyanobacteria phycocyanin within the framework of Förster theory

In the present study, the electronic energy transfer pathways in trimeric and hexameric aggregation state of cyanobacteria C‐phycocyanin (C‐PC) were investigated in term of the Förster theory. The corresponding excited states and transition dipole moments of phycocyanobilins (PCBs) located into C‐PC were examined by model chemistry in gas phase at time‐dependent density functional theory (TDDFT), configuration interaction‐singles (CIS), and Zerner's intermediate neglect of differential overlap (ZINDO) levels, respectively. Then, the long‐range pigment‐protein interactions were approximately taken into account by using polarizable continuum model (PCM) at TDDFT level to estimate the influence of protein environment on the preceding calculated physical quantities. The influence of the short‐range interaction caused by aspartate residue nearby PCBs was examined as well. Only when the protonation of PCBs and its long‐ and short‐range interactions were properly taken into account, the calculated energy transfer rates (1/K) in the framework of Förster model at TDDFT/B3LYP/6‐31+G* level were in good agreement with the experimental results of C‐PC monomer and trimer. Furthermore, the present calculated results suggested that the energy transfer pathway in C‐PC monomer is predominant from β‐155 to β‐84 (1/K = 13.4 ps), however, from α‐84 of one monomer to β‐84 (1/K = 0.3–0.4 ps) in a neighbor monomer in C‐PC trimer. In C‐PC hexamer, an additional energy flow was predicted to be from β‐155 (or α‐84) in top trimer to adjacent β‐155 (or α‐84) (1/K = 0.5–2.7 ps) in bottom trimer. © 2013 Wiley Periodicals, Inc.     

The B2–B7 phase transition in symmetrical bent‐shaped mesogens with methoxy substitution

New mesogens composed of achiral bent molecules with thermally stable ester linkages, and laterally substituted by a methoxy group symmetrically near the central benzene ring, were synthesized. Texture, calorimetric, electro‐optical, X‐ray and dielectric measurements were performed. In most of studied compounds the antiferroelectric B₂ phase was found on cooling from the isotropic phase, followed by the B₇ phase at lower temperatures. Undulation of layers in the B₇ phase was confirmed by precise synchrotron studies.