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61.
F. Torrens 《International journal of quantum chemistry》2002,88(4):392-397
A fast computer algorithm brings computation of the permanents of sparse matrices, specifically, molecular adjacency matrices. Examples and results are presented, along with a discussion of the relationship of the permanent to the Kekulé structure count. A simple method is presented for determining the Kekulé structure count of alternant hydrocarbons. For these hydrocarbons, the square of the Kekulé structure count is equal to the permanent of the adjacency matrix. In addition, for alternant structures the adjacency matrix for N atoms can be written in such a way that only an N/2 × N/2 matrix need be evaluated. The Kekulé structure count correlates with topological indices. The inclusion of the number of cycles improves the fit. When comparing with previous results, the variance decreases 74%. The calculated standard heat of formation correlates with the logarithm of the Kekulé structure count. This heat increments 349 kJ/mol each time the Kekulé structure count increases by one order of magnitude. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002 相似文献
62.
Riccardo LeardiRandy J. Pell 《Analytica chimica acta》2002,461(2):189-200
Variable selection using a genetic algorithm is combined with partial least squares (PLS) for the prediction of additive concentrations in polymer films using Fourier transform-infrared (FT-IR) spectral data. An approach using an iterative application of the genetic algorithm is proposed. This approach allows for all variables to be considered and at the same time minimizes the risk of overfitting. We demonstrate that the variables selected by the genetic algorithm are consistent with expert knowledge. This very exciting result is a convincing application that the algorithm can select correct variables in an automated fashion. 相似文献
63.
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65.
Daiki Fukuhara Masataka Yamauchi Satoru G. Itoh Hisashi Okumura 《Journal of computational chemistry》2023,44(4):534-545
In the replica-permutation method, an advanced version of the replica-exchange method, all combinations of replicas and parameters are considered for parameter permutation, and a list of all the combinations is prepared. Here, we report that the temperature transition probability depends on how the list is created, especially in replica permutation with solute tempering (RPST). We found that the transition probabilities decrease at large replica indices when the combinations are sequentially assigned to the state labels as in the originally proposed list. To solve this problem, we propose to modify the list by randomly assigning the combinations to the state labels. We performed molecular dynamics simulations of amyloid-β(16–22) peptides using RPST with the “randomly assigned” list (RPST-RA) and RPST with the “sequentially assigned” list (RPST-SA). The results show the decreases in the transition probabilities in RPST-SA are eliminated, and the sampling efficiency is improved in RPST-RA. 相似文献
66.
Luís G. Dias Cédric Sequeira Ana C.A. Veloso Mara E.B.C. Sousa António M. Peres 《Analytica chimica acta》2014
Overconsumption of sugar-sweetened beverages may increase the risk of health problems and so, the evaluation of their glycemic load and fructose-intolerance level is essential since it may allow establishing possible relations between physiologic effects of sugar-rich beverages and health. In this work, an electronic tongue was used to accurately classify beverages according to glycemic load (low, medium or high load) as well to their adequacy for people suffering from fructose malabsorption syndrome (tolerable or not): 100% of correct classifications (leave-one-out cross-validation) using linear discriminant models based on potentiomentric signals selected by a meta-heuristic simulated annealing algorithm. These results may be partially explained by the electronic tongue’s capability to mimic the human sweetness perception and total acid flavor of beverages, which can be related with glycemic load and fructose-intolerance index. Finally, the E-tongue was also applied to quantify, accurately, healthy and sensory indexes using multiple linear regression models (leave-one-out cross-validation: Radj > 0.99) in the following dynamic ranges: 4.7 < glycemic load ≤ 30; 0.4 < fructose intolerance index ≤ 1.5; 32 < sweetness perception < 155; 1.3 < total acid flavor, g L−1 < 8.3; and, 5.8 < well-balanced flavor ≤ 74. So, the proposed electronic tongue could be used as a practical, fast, low-cost and green tool for beverage’s healthy and sensory evaluation. 相似文献
67.
A new dynamic iterative algorithm code for retrieving macroscopic multilayer structure parameters (the layer thickness and complex refraction index for each layer, the surface roughness and the interface roughness between the layers) from specular scattering angular scan data is proposed. The use of conventional direct methods, particularly the well known Newton algorithm and gradient‐direction‐type algorithm operating dynamically to minimize the error functional in a least‐squares fashion, is explored. Such an approach works well and seems to be effective in solving the inverse problem in the high‐resolution X‐ray reflectometry (HRXR) method. In order to demonstrate some features of the proposed iterative algorithm, numerical calculations for retrieving three‐layer structure parameters are carried out using simulated HRXR angular scan data. The calculations indicate clearly that the dynamic iterative algorithm is convergent and capable of yielding the true solution. It is important that the performance coefficient for successful iterative cycles for the absolute minimization of the HRXR error functional is quite high even if the initial values of the search parameters are chosen rather far from the true values. It is particularly noteworthy that the relative number of successful iterative cycles is of the order of 90–40% when only moderately accurate initial parameter values, varying by ±10–40% from the true values, are presumed. 相似文献
68.
Jordi Rius Anna Crespi Xavier Torrelles 《Acta Crystallographica. Section A, Foundations and Advances》2007,63(2):131-134
An alternative way of refining phases with the origin‐free modulus sum function S is shown that, instead of applying the tangent formula in sequential mode [Rius (1993). Acta Cryst. A 49 , 406–409], applies it in parallel mode with the help of the fast Fourier transform (FFT) algorithm. The test calculations performed on intensity data of small crystal structures at atomic resolution prove the convergence and hence the viability of the procedure. This new procedure called S‐FFT is valid for all space groups and especially competitive for low‐symmetry ones. It works well when the charge‐density peaks in the crystal structure have the same sign, i.e. either positive or negative. 相似文献
69.
A hybrid‐input–output algorithm is applied to reconstruct hypothetical carbon cluster crystals in both two and three dimensions. It is shown that normalizing the Bragg peaks to those from a cluster of solid spheres or discs with uniform electron density can often lead to faithfully reconstructed objects at both atomic and low resolutions. It is shown that, even without the central peak, low‐resolution structures can still be reconstructed with good fidelity. The effect of Bragg‐peak noise on object reconstruction is examined throughout the paper. Successful reconstructions of 500‐ and 1000‐atom carbon cluster crystal structures at both atomic and low resolutions are given. 相似文献
70.
The photoelastic analysis of crack tip stress intensity factors has been historically developed for use on sharp notches in brittle materials that idealize the cracked structure. This approach, while useful, is not applicable to cases where residual effects of fatigue crack development (e.g., plasticity, surface roughness) affect the applied stress intensity range. A photoelastic model of these fatigue processes has been developed using polycarbonate, which is sufficiently ductile to allow the growth of a fatigue crack. The resultant stress field has been modeled mathematically using the stress potential function approach of Muskhelishvili to predict the stresses near a loaded but closed crack in an elastic body. The model was fitted to full-field photoelastic data using a combination of a generic algorithm and the downhill simplex method. The technique offers a significant advance in the ability to characterize the behavior of fatigue cracks with plasticity-induced closure, and hence to gain new insights into the associated mechanisms. 相似文献